Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   IRJ27_RS04160 Genome accession   NZ_CP064095
Coordinates   841704..842282 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain N1303-2Ay     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 836704..847282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS04125 lepB 836710..837216 (-) 507 WP_003233128.1 signal peptidase I -
  IRJ27_RS04130 yhjE 837218..837841 (-) 624 WP_010886465.1 VTT domain-containing protein -
  IRJ27_RS04135 - 837993..838355 (+) 363 WP_003233132.1 hypothetical protein -
  IRJ27_RS04140 yhjC 838563..838763 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  IRJ27_RS04145 yhjB 838760..840229 (+) 1470 WP_003233134.1 sodium:solute symporter -
  IRJ27_RS04150 yhjA 840272..840541 (-) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  IRJ27_RS04155 yhxD 840758..841657 (+) 900 WP_003245421.1 SDR family oxidoreductase -
  IRJ27_RS04160 comK 841704..842282 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  IRJ27_RS04165 yhzC 842575..842808 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  IRJ27_RS04170 yhxC 842836..843693 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  IRJ27_RS04175 yhfW 843805..845334 (+) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  IRJ27_RS04180 hemAT 845473..846771 (+) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=499371 IRJ27_RS04160 WP_003245329.1 841704..842282(-) (comK) [Bacillus subtilis strain N1303-2Ay]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=499371 IRJ27_RS04160 WP_003245329.1 841704..842282(-) (comK) [Bacillus subtilis strain N1303-2Ay]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1