Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   IRJ27_RS02095 Genome accession   NZ_CP064095
Coordinates   465025..465600 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain N1303-2Ay     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 460025..470600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS02070 mobB 460421..460942 (-) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  IRJ27_RS02075 glp 460903..462195 (-) 1293 WP_003232372.1 gephyrin-like molybdotransferase Glp -
  IRJ27_RS02080 moeB 462213..463232 (-) 1020 WP_003232375.1 molybdopterin-synthase adenylyltransferase MoeB -
  IRJ27_RS02085 mobA 463283..463882 (-) 600 WP_003232376.1 molybdenum cofactor guanylyltransferase -
  IRJ27_RS02090 cse15 464019..464984 (+) 966 WP_003245018.1 spore protein Cse15 -
  IRJ27_RS02095 rok 465025..465600 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  IRJ27_RS02100 ykuV 466066..466512 (-) 447 WP_003245810.1 thiol-disulfide oxidoreductase YkuV -
  IRJ27_RS02105 ahpA 466584..467126 (-) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  IRJ27_RS02110 mscT 467363..468166 (+) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  IRJ27_RS02115 ykuS 468203..468448 (-) 246 WP_003232382.1 YkuS family protein -
  IRJ27_RS02120 dapI 468510..469634 (-) 1125 WP_003232383.1 N-acetyldiaminopimelate deacetylase -
  IRJ27_RS02125 dapD 469704..470414 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=499358 IRJ27_RS02095 WP_003232378.1 465025..465600(-) (rok) [Bacillus subtilis strain N1303-2Ay]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=499358 IRJ27_RS02095 WP_003232378.1 465025..465600(-) (rok) [Bacillus subtilis strain N1303-2Ay]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1