Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IRJ27_RS01975 Genome accession   NZ_CP064095
Coordinates   441244..441522 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain N1303-2Ay     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 436244..446522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS01955 ade 436303..438036 (-) 1734 WP_003245362.1 adenine deaminase -
  IRJ27_RS01960 ktrC 438191..438856 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  IRJ27_RS01965 ykqA 438919..439752 (-) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  IRJ27_RS01970 kinC 439768..441054 (-) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  IRJ27_RS01975 abrB 441244..441522 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  IRJ27_RS01980 mreBH 441806..442813 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  IRJ27_RS01985 ykpC 442914..443048 (+) 135 WP_003238865.1 protein YkpC -
  IRJ27_RS01990 ampS 443158..444390 (+) 1233 WP_003232341.1 aminopeptidase -
  IRJ27_RS01995 - 444424..445335 (-) 912 WP_003245639.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=499357 IRJ27_RS01975 WP_003244728.1 441244..441522(-) (abrB) [Bacillus subtilis strain N1303-2Ay]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=499357 IRJ27_RS01975 WP_003244728.1 441244..441522(-) (abrB) [Bacillus subtilis strain N1303-2Ay]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576