Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   IRJ26_RS22150 Genome accession   NZ_CP064094
Coordinates   4211088..4211552 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain N1108-5at     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 4206088..4216552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS22130 fadH 4207276..4208040 (-) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -
  IRJ26_RS22135 ppeE 4208183..4209043 (+) 861 WP_003232400.1 metallophosphoesterase -
  IRJ26_RS22140 ltdD 4209100..4209594 (+) 495 WP_010886500.1 L,D-transpeptidase family protein -
  IRJ26_RS22145 ykuC 4209670..4210962 (+) 1293 WP_003245267.1 MFS transporter -
  IRJ26_RS22150 kre 4211088..4211552 (+) 465 WP_003232406.1 YkyB family protein Regulator
  IRJ26_RS22155 cheV 4211596..4212507 (-) 912 WP_009967126.1 chemotaxis protein CheV -
  IRJ26_RS22160 - 4212711..4212872 (+) 162 WP_003245246.1 hypothetical protein -
  IRJ26_RS22165 dapX 4213074..4214255 (+) 1182 WP_003232415.1 aminotransferase A -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=499352 IRJ26_RS22150 WP_003232406.1 4211088..4211552(+) (kre) [Bacillus subtilis strain N1108-5at]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=499352 IRJ26_RS22150 WP_003232406.1 4211088..4211552(+) (kre) [Bacillus subtilis strain N1108-5at]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTATCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1