Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   IRJ26_RS17715 Genome accession   NZ_CP064094
Coordinates   3344687..3345307 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain N1108-5at     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3339687..3350307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS17695 dnaD 3339978..3340676 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  IRJ26_RS17700 nth 3340695..3341354 (+) 660 WP_009967580.1 endonuclease III -
  IRJ26_RS17705 ypoC 3341351..3341845 (+) 495 WP_009967579.1 YpoC family protein -
  IRJ26_RS17710 ponA 3341921..3344665 (-) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  IRJ26_RS17715 recU 3344687..3345307 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  IRJ26_RS17720 yppC 3345348..3346310 (+) 963 WP_004398707.1 DUF2515 domain-containing protein -
  IRJ26_RS17725 sspM 3346335..3346439 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  IRJ26_RS17730 yppD 3346638..3346883 (+) 246 WP_004398488.1 YppD family protein -
  IRJ26_RS17735 yppE 3346929..3347300 (+) 372 WP_003246080.1 YppE family protein -
  IRJ26_RS17740 yppF 3347339..3347527 (-) 189 WP_003230690.1 YppF family protein -
  IRJ26_RS17745 yppG 3347715..3348092 (+) 378 WP_004398696.1 YppG family protein -
  IRJ26_RS17750 ypqA 3348113..3348532 (-) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  IRJ26_RS17755 ypqE 3348670..3349176 (+) 507 WP_009967573.1 glucose PTS transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=499345 IRJ26_RS17715 WP_004399067.1 3344687..3345307(-) (recU) [Bacillus subtilis strain N1108-5at]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=499345 IRJ26_RS17715 WP_004399067.1 3344687..3345307(-) (recU) [Bacillus subtilis strain N1108-5at]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1