Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   IRJ26_RS16200 Genome accession   NZ_CP064094
Coordinates   3076402..3077169 (+) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain N1108-5at     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3071402..3082169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS16170 pgpH 3071698..3073833 (+) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -
  IRJ26_RS16175 ybeY 3073834..3074307 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  IRJ26_RS16180 unpK 3074288..3074659 (+) 372 WP_004398824.1 diacylglycerol kinase family protein -
  IRJ26_RS16185 cdd 3074778..3075188 (+) 411 WP_003230049.1 cytidine deaminase -
  IRJ26_RS16190 era 3075169..3076074 (+) 906 WP_003230051.1 GTPase Era -
  IRJ26_RS16195 yqzL 3076222..3076365 (+) 144 WP_003230053.1 YqzL family protein -
  IRJ26_RS16200 recO 3076402..3077169 (+) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  IRJ26_RS16205 glyQ 3077466..3078353 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  IRJ26_RS16210 glyS 3078346..3080385 (+) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  IRJ26_RS16215 ccpN 3080518..3081156 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  IRJ26_RS16220 ppsR 3081182..3081994 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=499333 IRJ26_RS16200 WP_003230055.1 3076402..3077169(+) (recO) [Bacillus subtilis strain N1108-5at]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=499333 IRJ26_RS16200 WP_003230055.1 3076402..3077169(+) (recO) [Bacillus subtilis strain N1108-5at]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1