Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IRJ26_RS07490 Genome accession   NZ_CP064094
Coordinates   1425372..1425662 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain N1108-5at     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1420372..1430662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS07475 yabE 1420568..1421881 (-) 1314 WP_003226754.1 ubiquitin-like domain-containing protein -
  IRJ26_RS07480 dayD 1422037..1422804 (-) 768 WP_003226756.1 TatD family hydrolase -
  IRJ26_RS07485 metG 1422883..1424877 (-) 1995 WP_003226758.1 methionine--tRNA ligase -
  IRJ26_RS07490 abrB 1425372..1425662 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  IRJ26_RS07495 rsmI 1425711..1426589 (-) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  IRJ26_RS07500 yazA 1426564..1426863 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  IRJ26_RS07505 trmNF 1426850..1427593 (-) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  IRJ26_RS07510 yabA 1427652..1428011 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  IRJ26_RS07515 ricT 1428026..1428853 (-) 828 WP_003243571.1 competence/sporulation regulator complex protein RicT -
  IRJ26_RS07520 holB 1428856..1429845 (-) 990 WP_003244417.1 DNA polymerase III subunit delta' -
  IRJ26_RS07525 yaaR 1429857..1430297 (-) 441 WP_009966249.1 YaaR family protein -
  IRJ26_RS07530 darA 1430310..1430639 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=499300 IRJ26_RS07490 WP_003226760.1 1425372..1425662(+) (abrB) [Bacillus subtilis strain N1108-5at]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=499300 IRJ26_RS07490 WP_003226760.1 1425372..1425662(+) (abrB) [Bacillus subtilis strain N1108-5at]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1