Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   IRJ26_RS05750 Genome accession   NZ_CP064094
Coordinates   1097936..1098385 (+) Length   149 a.a.
NCBI ID   WP_003246436.1    Uniprot ID   A0AAE2SFQ0
Organism   Bacillus subtilis strain N1108-5at     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1092936..1103385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS05730 hxlR 1094146..1094508 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  IRJ26_RS05735 hxlA 1094741..1095373 (+) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  IRJ26_RS05740 hxlB 1095379..1095936 (+) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  IRJ26_RS05745 tlpC 1096047..1097768 (+) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  IRJ26_RS05750 nucA/comI 1097936..1098385 (+) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  IRJ26_RS05755 nin/comJ 1098412..1098810 (+) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  IRJ26_RS05760 bglC 1098847..1100280 (-) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  IRJ26_RS05765 yckD 1100434..1100766 (-) 333 WP_003246247.1 YckD family protein -
  IRJ26_RS05770 yckC 1100848..1101303 (-) 456 WP_003246356.1 RDD family protein -
  IRJ26_RS05775 - 1101322..1101519 (-) 198 WP_119122841.1 hypothetical protein -
  IRJ26_RS05780 yckB 1101681..1102544 (+) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  IRJ26_RS05785 yckA 1102554..1103234 (+) 681 WP_003234624.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16486.48 Da        Isoelectric Point: 4.6274

>NTDB_id=499295 IRJ26_RS05750 WP_003246436.1 1097936..1098385(+) (nucA/comI) [Bacillus subtilis strain N1108-5at]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=499295 IRJ26_RS05750 WP_003246436.1 1097936..1098385(+) (nucA/comI) [Bacillus subtilis strain N1108-5at]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATGGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
GGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

100

100

1