Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   IRJ26_RS03000 Genome accession   NZ_CP064094
Coordinates   544119..544913 (-) Length   264 a.a.
NCBI ID   WP_003243354.1    Uniprot ID   A0AAE2SGN5
Organism   Bacillus subtilis strain N1108-5at     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 539119..549913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS02965 ephM 539961..540821 (-) 861 WP_003243419.1 epoxide hydrolase EphM -
  IRJ26_RS02970 spdL 540808..541140 (-) 333 WP_003242803.1 SdpC immunity protein SpdL -
  IRJ26_RS02975 yfhK 541225..541743 (-) 519 WP_003243363.1 SH3 domain-containing protein -
  IRJ26_RS02980 yfhJ 541888..542157 (-) 270 WP_003243789.1 YfhJ family protein -
  IRJ26_RS02985 sspK 542282..542434 (+) 153 WP_003223241.1 small, acid-soluble spore protein K -
  IRJ26_RS02990 yfhI 542467..543660 (-) 1194 WP_003243500.1 MFS transporter -
  IRJ26_RS02995 yfhH 543803..544117 (-) 315 WP_003244592.1 YfhH family protein -
  IRJ26_RS03000 recX 544119..544913 (-) 795 WP_003243354.1 recombination regulator RecX Regulator
  IRJ26_RS03005 yfhF 545002..545913 (+) 912 WP_003244332.1 TIGR01777 family oxidoreductase -
  IRJ26_RS03010 yfhE 545968..546078 (+) 111 WP_003223230.1 YfhE family protein -
  IRJ26_RS03015 yfhD 546145..546336 (+) 192 WP_003233561.1 YfhD family protein -
  IRJ26_RS03020 yfhC 546375..546959 (-) 585 WP_003243940.1 nitroreductase -
  IRJ26_RS03025 yfhB 547047..547928 (-) 882 WP_003242763.1 PhzF family phenazine biosynthesis protein -
  IRJ26_RS03030 sxzA 548043..549074 (-) 1032 WP_003243057.1 iron ABC transporter permease -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31013.23 Da        Isoelectric Point: 6.6686

>NTDB_id=499284 IRJ26_RS03000 WP_003243354.1 544119..544913(-) (recX) [Bacillus subtilis strain N1108-5at]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=499284 IRJ26_RS03000 WP_003243354.1 544119..544913(-) (recX) [Bacillus subtilis strain N1108-5at]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGATCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

100

100

1