Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECOK1_RS05245 Genome accession   NC_017628
Coordinates   1061565..1062194 (+) Length   209 a.a.
NCBI ID   WP_000839135.1    Uniprot ID   -
Organism   Escherichia coli IHE3034     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1056565..1067194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECOK1_RS05220 (ECOK1_1014) ycbZ 1056965..1058725 (-) 1761 WP_000156501.1 Lon protease family protein -
  ECOK1_RS05225 (ECOK1_1015) matP 1058911..1059363 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ECOK1_RS05230 (ECOK1_1016) ompA 1059441..1060481 (-) 1041 WP_001350588.1 porin OmpA -
  ECOK1_RS05240 (ECOK1_1017) sulA 1060837..1061346 (-) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  ECOK1_RS05245 (ECOK1_1020) sxy/tfoX 1061565..1062194 (+) 630 WP_000839135.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECOK1_RS05250 (ECOK1_1019) yccS 1062157..1064319 (-) 2163 WP_000875041.1 YccS family putative transporter -
  ECOK1_RS05255 (ECOK1_1021) yccF 1064329..1064775 (-) 447 WP_001261236.1 YccF domain-containing protein -
  ECOK1_RS05260 (ECOK1_1022) helD 1064898..1066952 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24144.10 Da        Isoelectric Point: 9.2180

>NTDB_id=49928 ECOK1_RS05245 WP_000839135.1 1061565..1062194(+) (sxy/tfoX) [Escherichia coli IHE3034]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLLNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=49928 ECOK1_RS05245 WP_000839135.1 1061565..1062194(+) (sxy/tfoX) [Escherichia coli IHE3034]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCTCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

98.565

100

0.986

Multiple sequence alignment