Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   IRJ26_RS01935 Genome accession   NZ_CP064094
Coordinates   352869..353447 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain N1108-5at     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 347869..358447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS01900 lepB 347875..348381 (-) 507 WP_003233128.1 signal peptidase I -
  IRJ26_RS01905 yhjE 348383..349006 (-) 624 WP_010886465.1 VTT domain-containing protein -
  IRJ26_RS01910 - 349158..349520 (+) 363 WP_003233132.1 hypothetical protein -
  IRJ26_RS01915 yhjC 349728..349928 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  IRJ26_RS01920 yhjB 349925..351394 (+) 1470 WP_003233134.1 sodium:solute symporter -
  IRJ26_RS01925 yhjA 351437..351706 (-) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  IRJ26_RS01930 yhxD 351923..352822 (+) 900 WP_003245421.1 SDR family oxidoreductase -
  IRJ26_RS01935 comK 352869..353447 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  IRJ26_RS01940 yhzC 353740..353973 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  IRJ26_RS01945 yhxC 354001..354858 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  IRJ26_RS01950 yhfW 354970..356499 (+) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  IRJ26_RS01955 hemAT 356638..357936 (+) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=499279 IRJ26_RS01935 WP_003245329.1 352869..353447(-) (comK) [Bacillus subtilis strain N1108-5at]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=499279 IRJ26_RS01935 WP_003245329.1 352869..353447(-) (comK) [Bacillus subtilis strain N1108-5at]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1