Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   IRJ26_RS01480 Genome accession   NZ_CP064094
Coordinates   262974..263927 (-) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis strain N1108-5at     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 257974..268927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS01450 appD 258093..259079 (-) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -
  IRJ26_RS01455 yjaZ 259271..260056 (-) 786 WP_003232967.1 DUF2268 domain-containing protein -
  IRJ26_RS01460 fabF 260132..261373 (-) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  IRJ26_RS01465 fabH 261396..262334 (-) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  IRJ26_RS01470 yjzB 262499..262738 (+) 240 WP_003232972.1 spore coat protein YjzB -
  IRJ26_RS01475 comZ 262768..262959 (-) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  IRJ26_RS01480 med 262974..263927 (-) 954 WP_003245494.1 transcriptional regulator Med Regulator
  IRJ26_RS01485 - 264018..264575 (-) 558 WP_003232974.1 hypothetical protein -
  IRJ26_RS01490 - 264657..265391 (-) 735 WP_003245223.1 hypothetical protein -
  IRJ26_RS01495 yjzD 265640..265825 (+) 186 WP_003245236.1 DUF2929 domain-containing protein -
  IRJ26_RS01500 yjzC 265871..266050 (-) 180 WP_003245356.1 YjzC family protein -
  IRJ26_RS01505 argF 266136..267095 (-) 960 WP_003232980.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=499276 IRJ26_RS01480 WP_003245494.1 262974..263927(-) (med) [Bacillus subtilis strain N1108-5at]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=499276 IRJ26_RS01480 WP_003245494.1 262974..263927(-) (med) [Bacillus subtilis strain N1108-5at]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1