Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   IRJ24_RS21795 Genome accession   NZ_CP064093
Coordinates   4152157..4152735 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain N1282-4at     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4147157..4157735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS21760 lepB 4147163..4147669 (-) 507 WP_003233128.1 signal peptidase I -
  IRJ24_RS21765 yhjE 4147671..4148294 (-) 624 WP_010886465.1 VTT domain-containing protein -
  IRJ24_RS21770 - 4148446..4148808 (+) 363 WP_003233132.1 hypothetical protein -
  IRJ24_RS21775 yhjC 4149016..4149216 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  IRJ24_RS21780 yhjB 4149213..4150682 (+) 1470 WP_003233134.1 sodium:solute symporter -
  IRJ24_RS21785 yhjA 4150725..4150994 (-) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  IRJ24_RS21790 yhxD 4151211..4152110 (+) 900 WP_003245421.1 SDR family oxidoreductase -
  IRJ24_RS21795 comK 4152157..4152735 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  IRJ24_RS21800 yhzC 4153028..4153261 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  IRJ24_RS21805 yhxC 4153289..4154146 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  IRJ24_RS21810 yhfW 4154258..4155787 (+) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  IRJ24_RS21815 hemAT 4155926..4157224 (+) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=499264 IRJ24_RS21795 WP_003245329.1 4152157..4152735(-) (comK) [Bacillus subtilis strain N1282-4at]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=499264 IRJ24_RS21795 WP_003245329.1 4152157..4152735(-) (comK) [Bacillus subtilis strain N1282-4at]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1