Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   IRJ24_RS19845 Genome accession   NZ_CP064093
Coordinates   3794816..3795280 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain N1282-4at     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3789816..3800280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS19825 fadH 3791004..3791768 (-) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -
  IRJ24_RS19830 ppeE 3791911..3792771 (+) 861 WP_003232400.1 metallophosphoesterase -
  IRJ24_RS19835 ltdD 3792828..3793322 (+) 495 WP_010886500.1 L,D-transpeptidase family protein -
  IRJ24_RS19840 ykuC 3793398..3794690 (+) 1293 WP_003245267.1 MFS transporter -
  IRJ24_RS19845 kre 3794816..3795280 (+) 465 WP_003232406.1 YkyB family protein Regulator
  IRJ24_RS19850 cheV 3795324..3796235 (-) 912 WP_009967126.1 chemotaxis protein CheV -
  IRJ24_RS19855 - 3796439..3796600 (+) 162 WP_003245246.1 hypothetical protein -
  IRJ24_RS19860 dapX 3796802..3797983 (+) 1182 WP_003232415.1 aminotransferase A -
  IRJ24_RS19865 kinA 3797994..3799814 (-) 1821 WP_003245779.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=499252 IRJ24_RS19845 WP_003232406.1 3794816..3795280(+) (kre) [Bacillus subtilis strain N1282-4at]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=499252 IRJ24_RS19845 WP_003232406.1 3794816..3795280(+) (kre) [Bacillus subtilis strain N1282-4at]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTATCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1