Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   IRJ24_RS19730 Genome accession   NZ_CP064093
Coordinates   3775478..3776053 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain N1282-4at     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3770478..3781053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS19705 mobB 3770874..3771395 (-) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  IRJ24_RS19710 glp 3771356..3772648 (-) 1293 WP_003232372.1 gephyrin-like molybdotransferase Glp -
  IRJ24_RS19715 moeB 3772666..3773685 (-) 1020 WP_003232375.1 molybdopterin-synthase adenylyltransferase MoeB -
  IRJ24_RS19720 mobA 3773736..3774335 (-) 600 WP_003232376.1 molybdenum cofactor guanylyltransferase -
  IRJ24_RS19725 cse15 3774472..3775437 (+) 966 WP_003245018.1 spore protein Cse15 -
  IRJ24_RS19730 rok 3775478..3776053 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  IRJ24_RS19735 ykuV 3776519..3776965 (-) 447 WP_003245810.1 thiol-disulfide oxidoreductase YkuV -
  IRJ24_RS19740 ahpA 3777037..3777579 (-) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  IRJ24_RS19745 mscT 3777816..3778619 (+) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  IRJ24_RS19750 ykuS 3778656..3778901 (-) 246 WP_003232382.1 YkuS family protein -
  IRJ24_RS19755 dapI 3778963..3780087 (-) 1125 WP_003232383.1 N-acetyldiaminopimelate deacetylase -
  IRJ24_RS19760 dapD 3780157..3780867 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=499251 IRJ24_RS19730 WP_003232378.1 3775478..3776053(-) (rok) [Bacillus subtilis strain N1282-4at]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=499251 IRJ24_RS19730 WP_003232378.1 3775478..3776053(-) (rok) [Bacillus subtilis strain N1282-4at]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1