Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IRJ24_RS19610 Genome accession   NZ_CP064093
Coordinates   3751697..3751975 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain N1282-4at     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3746697..3756975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS19590 ade 3746756..3748489 (-) 1734 WP_003245362.1 adenine deaminase -
  IRJ24_RS19595 ktrC 3748644..3749309 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  IRJ24_RS19600 ykqA 3749372..3750205 (-) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  IRJ24_RS19605 kinC 3750221..3751507 (-) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  IRJ24_RS19610 abrB 3751697..3751975 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  IRJ24_RS19615 mreBH 3752259..3753266 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  IRJ24_RS19620 ykpC 3753367..3753501 (+) 135 WP_003238865.1 protein YkpC -
  IRJ24_RS19625 ampS 3753611..3754843 (+) 1233 WP_003232341.1 aminopeptidase -
  IRJ24_RS19630 - 3754877..3755788 (-) 912 WP_003245639.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=499250 IRJ24_RS19610 WP_003244728.1 3751697..3751975(-) (abrB) [Bacillus subtilis strain N1282-4at]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=499250 IRJ24_RS19610 WP_003244728.1 3751697..3751975(-) (abrB) [Bacillus subtilis strain N1282-4at]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576