Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   IRJ24_RS15420 Genome accession   NZ_CP064093
Coordinates   2928415..2929035 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain N1282-4at     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2923415..2934035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS15400 dnaD 2923706..2924404 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  IRJ24_RS15405 nth 2924423..2925082 (+) 660 WP_009967580.1 endonuclease III -
  IRJ24_RS15410 ypoC 2925079..2925573 (+) 495 WP_009967579.1 YpoC family protein -
  IRJ24_RS15415 ponA 2925649..2928393 (-) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  IRJ24_RS15420 recU 2928415..2929035 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  IRJ24_RS15425 yppC 2929076..2930038 (+) 963 WP_004398707.1 DUF2515 domain-containing protein -
  IRJ24_RS15430 sspM 2930063..2930167 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  IRJ24_RS15435 yppD 2930366..2930611 (+) 246 WP_004398488.1 YppD family protein -
  IRJ24_RS15440 yppE 2930657..2931028 (+) 372 WP_003246080.1 YppE family protein -
  IRJ24_RS15445 yppF 2931067..2931255 (-) 189 WP_003230690.1 YppF family protein -
  IRJ24_RS15450 yppG 2931443..2931820 (+) 378 WP_004398696.1 YppG family protein -
  IRJ24_RS15455 ypqA 2931841..2932260 (-) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  IRJ24_RS15460 ypqE 2932398..2932904 (+) 507 WP_009967573.1 glucose PTS transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=499245 IRJ24_RS15420 WP_004399067.1 2928415..2929035(-) (recU) [Bacillus subtilis strain N1282-4at]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=499245 IRJ24_RS15420 WP_004399067.1 2928415..2929035(-) (recU) [Bacillus subtilis strain N1282-4at]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1