Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   IRJ24_RS14435 Genome accession   NZ_CP064093
Coordinates   2751018..2751821 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain N1282-4at     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2746018..2756821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS14415 yqxC 2746128..2746973 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  IRJ24_RS14420 argR 2747071..2747520 (+) 450 WP_003230265.1 arginine repressor ArgR -
  IRJ24_RS14425 recN 2747557..2749287 (+) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  IRJ24_RS14430 spoIVB 2749462..2750742 (+) 1281 WP_004398697.1 SpoIVB peptidase -
  IRJ24_RS14435 spo0A 2751018..2751821 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  IRJ24_RS14440 yqiG 2752286..2753404 (-) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  IRJ24_RS14445 - 2753477..2753629 (-) 153 WP_003230276.1 hypothetical protein -
  IRJ24_RS14450 yqiH 2753937..2754230 (+) 294 WP_003230284.1 lipoprotein -
  IRJ24_RS14455 yqiI 2754245..2754865 (+) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  IRJ24_RS14460 glpQ 2754944..2755675 (+) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=499244 IRJ24_RS14435 WP_003226427.1 2751018..2751821(+) (spo0A) [Bacillus subtilis strain N1282-4at]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=499244 IRJ24_RS14435 WP_003226427.1 2751018..2751821(+) (spo0A) [Bacillus subtilis strain N1282-4at]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1