Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   IRJ24_RS13905 Genome accession   NZ_CP064093
Coordinates   2660130..2660897 (+) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain N1282-4at     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2655130..2665897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS13875 pgpH 2655426..2657561 (+) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -
  IRJ24_RS13880 ybeY 2657562..2658035 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  IRJ24_RS13885 unpK 2658016..2658387 (+) 372 WP_004398824.1 diacylglycerol kinase family protein -
  IRJ24_RS13890 cdd 2658506..2658916 (+) 411 WP_003230049.1 cytidine deaminase -
  IRJ24_RS13895 era 2658897..2659802 (+) 906 WP_003230051.1 GTPase Era -
  IRJ24_RS13900 yqzL 2659950..2660093 (+) 144 WP_003230053.1 YqzL family protein -
  IRJ24_RS13905 recO 2660130..2660897 (+) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  IRJ24_RS13910 glyQ 2661194..2662081 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  IRJ24_RS13915 glyS 2662074..2664113 (+) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  IRJ24_RS13920 ccpN 2664246..2664884 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  IRJ24_RS13925 ppsR 2664910..2665722 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=499233 IRJ24_RS13905 WP_003230055.1 2660130..2660897(+) (recO) [Bacillus subtilis strain N1282-4at]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=499233 IRJ24_RS13905 WP_003230055.1 2660130..2660897(+) (recO) [Bacillus subtilis strain N1282-4at]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1