Detailed information NTG0499216

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JFX80_RS22825
• Genome accession: NZ_CP075632
• Coordinates: 4626646..4627638 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2018-166
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4621646..4632638

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JFX80_RS22795 (JFX80_22810)	ispD	4621707..4622417 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JFX80_RS22800 (JFX80_22815)	ispF	4622417..4622896 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JFX80_RS22805 (JFX80_22820)	truD	4622893..4623942 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
JFX80_RS22810 (JFX80_22825)	surE	4623923..4624684 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JFX80_RS22815 (JFX80_22830)	pcm	4624678..4625304 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JFX80_RS22820 (JFX80_22835)	nlpD	4625489..4626583 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
JFX80_RS22825 (JFX80_22840)	rpoS	4626646..4627638 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JFX80_RS22830 (JFX80_22845)	-	4627759..4628166 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
JFX80_RS22835 (JFX80_22850)	-	4628313..4628906 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
JFX80_RS22840 (JFX80_22855)	-	4628906..4630333 (+)	1428	WP_000863193.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
JFX80_RS22845 (JFX80_22860)	-	4630344..4630580 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
JFX80_RS22850 (JFX80_22865)	ygbN	4630619..4631983 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=499216 JFX80_RS22825 WP_000081550.1 4626646..4627638(+) (rpoS) [Escherichia coli strain 2018-166]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=499216 JFX80_RS22825 WP_000081550.1 4626646..4627638(+) (rpoS) [Escherichia coli strain 2018-166]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715