Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   IRJ24_RS08430 Genome accession   NZ_CP064093
Coordinates   1624549..1625238 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain N1282-4at     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1619549..1630238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS08410 tagO 1620115..1621191 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  IRJ24_RS08415 tagV 1621264..1622439 (-) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  IRJ24_RS08420 yvyE 1622439..1623092 (-) 654 WP_003227979.1 YigZ family protein -
  IRJ24_RS08425 degS 1623309..1624466 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  IRJ24_RS08430 degU 1624549..1625238 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IRJ24_RS08435 fakBA 1625336..1626181 (+) 846 WP_003244125.1 DegV family protein -
  IRJ24_RS08440 comFA 1626287..1627678 (+) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  IRJ24_RS08445 comFB 1627738..1628034 (+) 297 WP_003227989.1 late competence protein ComFB -
  IRJ24_RS08450 comFC 1627998..1628720 (+) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  IRJ24_RS08455 yvyF 1628794..1629213 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  IRJ24_RS08460 flgM 1629294..1629560 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  IRJ24_RS08465 flgN 1629576..1630058 (+) 483 WP_003227999.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=499212 IRJ24_RS08430 WP_003219701.1 1624549..1625238(+) (degU) [Bacillus subtilis strain N1282-4at]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=499212 IRJ24_RS08430 WP_003219701.1 1624549..1625238(+) (degU) [Bacillus subtilis strain N1282-4at]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1