Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IRJ24_RS05220 Genome accession   NZ_CP064093
Coordinates   1009090..1009380 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain N1282-4at     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1004090..1014380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS05205 yabE 1004286..1005599 (-) 1314 WP_003226754.1 ubiquitin-like domain-containing protein -
  IRJ24_RS05210 dayD 1005755..1006522 (-) 768 WP_003226756.1 TatD family hydrolase -
  IRJ24_RS05215 metG 1006601..1008595 (-) 1995 WP_003226758.1 methionine--tRNA ligase -
  IRJ24_RS05220 abrB 1009090..1009380 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  IRJ24_RS05225 rsmI 1009429..1010307 (-) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  IRJ24_RS05230 yazA 1010282..1010581 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  IRJ24_RS05235 trmNF 1010568..1011311 (-) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  IRJ24_RS05240 yabA 1011370..1011729 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  IRJ24_RS05245 ricT 1011744..1012571 (-) 828 WP_003243571.1 competence/sporulation regulator complex protein RicT -
  IRJ24_RS05250 holB 1012574..1013563 (-) 990 WP_003244417.1 DNA polymerase III subunit delta' -
  IRJ24_RS05255 yaaR 1013575..1014015 (-) 441 WP_009966249.1 YaaR family protein -
  IRJ24_RS05260 darA 1014028..1014357 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=499200 IRJ24_RS05220 WP_003226760.1 1009090..1009380(+) (abrB) [Bacillus subtilis strain N1282-4at]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=499200 IRJ24_RS05220 WP_003226760.1 1009090..1009380(+) (abrB) [Bacillus subtilis strain N1282-4at]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1