Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   IRJ24_RS03490 Genome accession   NZ_CP064093
Coordinates   682143..682541 (+) Length   132 a.a.
NCBI ID   WP_003246342.1    Uniprot ID   A0AAE2SGH7
Organism   Bacillus subtilis strain N1282-4at     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 677143..687541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS03465 hxlR 677877..678239 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  IRJ24_RS03470 hxlA 678472..679104 (+) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  IRJ24_RS03475 hxlB 679110..679667 (+) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  IRJ24_RS03480 tlpC 679778..681499 (+) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  IRJ24_RS03485 nucA/comI 681667..682116 (+) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  IRJ24_RS03490 nin/comJ 682143..682541 (+) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  IRJ24_RS03495 bglC 682578..684011 (-) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  IRJ24_RS03500 yckD 684165..684497 (-) 333 WP_003246247.1 YckD family protein -
  IRJ24_RS03505 yckC 684579..685034 (-) 456 WP_003246356.1 RDD family protein -
  IRJ24_RS03510 - 685053..685250 (-) 198 WP_119122841.1 hypothetical protein -
  IRJ24_RS03515 yckB 685412..686275 (+) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  IRJ24_RS03520 yckA 686285..686965 (+) 681 WP_003234624.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14996.95 Da        Isoelectric Point: 4.8991

>NTDB_id=499196 IRJ24_RS03490 WP_003246342.1 682143..682541(+) (nin/comJ) [Bacillus subtilis strain N1282-4at]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILFRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=499196 IRJ24_RS03490 WP_003246342.1 682143..682541(+) (nin/comJ) [Bacillus subtilis strain N1282-4at]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTTCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

100

100

1