Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   IRJ22_RS18905 Genome accession   NZ_CP064092
Coordinates   3636668..3637114 (-) Length   148 a.a.
NCBI ID   WP_003178810.1    Uniprot ID   A0A8B5YEZ5
Organism   Bacillus licheniformis strain C5     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3631668..3642114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS18880 - 3632275..3633150 (-) 876 WP_003178801.1 transporter substrate-binding domain-containing protein -
  IRJ22_RS18885 - 3633334..3633885 (+) 552 WP_003178803.1 NAD(P)H-dependent oxidoreductase -
  IRJ22_RS18890 - 3633982..3634707 (+) 726 WP_003178804.1 AAA family ATPase -
  IRJ22_RS18895 - 3634777..3636213 (+) 1437 WP_003178806.1 glycoside hydrolase family 1 protein -
  IRJ22_RS18900 nin/comJ 3636252..3636650 (-) 399 WP_003178808.1 competence protein ComJ Regulator
  IRJ22_RS18905 nucA/comI 3636668..3637114 (-) 447 WP_003178810.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  IRJ22_RS18910 - 3637381..3637584 (+) 204 WP_003178812.1 hypothetical protein -
  IRJ22_RS18915 - 3637590..3638393 (+) 804 WP_003178814.1 serine/threonine protein kinase -
  IRJ22_RS18920 - 3638413..3640097 (-) 1685 Protein_3731 methyl-accepting chemotaxis protein -
  IRJ22_RS18925 - 3640213..3640953 (-) 741 WP_003178817.1 ribonuclease YeeF family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16224.12 Da        Isoelectric Point: 4.9954

>NTDB_id=499179 IRJ22_RS18905 WP_003178810.1 3636668..3637114(-) (nucA/comI) [Bacillus licheniformis strain C5]
MDKIKSLLITLLAVAVVIIGIVSGDFFTSEHQPSGRQNGSNYDEVLIFPSDRYPETGAHIRKAIKKGHSEICTIDRDGAD
ERRKDSLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKVLFKIN

Nucleotide


Download         Length: 447 bp        

>NTDB_id=499179 IRJ22_RS18905 WP_003178810.1 3636668..3637114(-) (nucA/comI) [Bacillus licheniformis strain C5]
ATGGACAAGATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGTATTGTATCTGGCGACTTTTT
CACTTCAGAACACCAGCCTTCGGGCCGGCAAAACGGCTCAAACTACGATGAAGTGCTGATTTTTCCTTCGGACCGCTATC
CTGAAACAGGCGCACACATTCGAAAGGCTATCAAAAAAGGGCACTCCGAAATCTGTACGATCGACAGGGACGGAGCCGAC
GAACGCCGAAAGGATTCATTGAAAGATGTTCCTTCCAAATCAGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCTGTCGAGTATATCAGCCCGTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGGACGAAAGTACTTTTCAAGATTAATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B5YEZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.626

99.324

0.642