Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   IRJ22_RS14045 Genome accession   NZ_CP064092
Coordinates   2660705..2661439 (-) Length   244 a.a.
NCBI ID   WP_011198352.1    Uniprot ID   A0A415J866
Organism   Bacillus licheniformis strain C5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2655705..2666439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS14010 fliW 2655856..2656287 (-) 432 WP_011198351.1 flagellar assembly protein FliW -
  IRJ22_RS14015 - 2656309..2656875 (-) 567 WP_009329670.1 DUF6470 family protein -
  IRJ22_RS14020 flgL 2656925..2657836 (-) 912 WP_003185705.1 flagellar hook-associated protein FlgL -
  IRJ22_RS14025 flgK 2657847..2659370 (-) 1524 WP_003185709.1 flagellar hook-associated protein FlgK -
  IRJ22_RS14030 - 2659386..2659862 (-) 477 WP_003185711.1 flagellar protein FlgN -
  IRJ22_RS14035 flgM 2659881..2660147 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  IRJ22_RS14040 - 2660227..2660646 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  IRJ22_RS14045 comFC 2660705..2661439 (-) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  IRJ22_RS14050 - 2661396..2661680 (-) 285 WP_003185718.1 late competence development ComFB family protein -
  IRJ22_RS14055 comFA 2661735..2663129 (-) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  IRJ22_RS14060 - 2663250..2664092 (-) 843 WP_003185726.1 DegV family protein -
  IRJ22_RS14065 degU 2664212..2664901 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  IRJ22_RS14070 degS 2664983..2666140 (-) 1158 WP_003185733.1 sensor histidine kinase Regulator

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27811.22 Da        Isoelectric Point: 9.4827

>NTDB_id=499161 IRJ22_RS14045 WP_011198352.1 2660705..2661439(-) (comFC) [Bacillus licheniformis strain C5]
MKTRFAQAIEEGGNKLNCLICAAPLLHSLSWHSFFFLRSEEKICRECKENFIEIKGTVCPKCGRPQGSEELCGDCAKWEA
NPLTRSLLRQNRSVYLYNTFMKEVLARFKFRGDAELVFAFAPSFISAFQQYFRRSPSVLVPIPLSEERKAERGFNQAERL
ASLLQIPVIHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDVILIDDLYTTGATLHHAADCLMTSGEAKSVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=499161 IRJ22_RS14045 WP_011198352.1 2660705..2661439(-) (comFC) [Bacillus licheniformis strain C5]
ATGAAAACCCGCTTTGCGCAAGCAATCGAAGAGGGAGGGAATAAACTGAATTGTTTAATTTGTGCAGCGCCTCTTTTACA
TTCTCTCTCATGGCATTCTTTTTTCTTTTTACGATCAGAAGAGAAAATATGCAGGGAATGTAAAGAGAACTTTATCGAGA
TCAAAGGAACCGTATGCCCTAAGTGCGGACGGCCACAGGGGAGCGAAGAGCTGTGCGGTGACTGCGCAAAATGGGAGGCC
AATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTTTATCTCTACAATACTTTCATGAAAGAAGTCCTTGCCCG
TTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCCCCTTCATTTATCAGCGCTTTTCAACAATACTTCCGCC
GCAGCCCGTCTGTTTTAGTTCCGATACCTCTCAGTGAAGAACGTAAAGCGGAGAGGGGATTTAATCAGGCGGAGCGTCTT
GCTTCCTTATTACAAATACCCGTTATTCATCCCTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGGAAAGA
GCGAATTAAGCCAAAAACCGTTTTTAGAACCGAAAAGGGGTCAGTAAAGAATCTGGATGTCATATTGATTGACGACTTGT
ATACGACAGGAGCGACCCTTCATCATGCCGCTGATTGCCTGATGACATCCGGAGAAGCAAAATCTGTATCATCATATACA
TTAATTAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(151-242)

Double zinc ribbon domain (DZR_2)

(17-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A415J866

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

52.321

97.131

0.508