Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IRJ22_RS08925 Genome accession   NZ_CP064092
Coordinates   1695261..1695890 (-) Length   209 a.a.
NCBI ID   WP_003183693.1    Uniprot ID   Q8VQ77
Organism   Bacillus licheniformis strain C5     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1690261..1700890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS08900 rpsT 1690475..1690741 (+) 267 WP_003183682.1 30S ribosomal protein S20 -
  IRJ22_RS08905 holA 1690803..1691846 (-) 1044 WP_025804972.1 DNA polymerase III subunit delta -
  IRJ22_RS08910 - 1692076..1692207 (+) 132 WP_003183686.1 YqzM family protein -
  IRJ22_RS08915 - 1692232..1694619 (-) 2388 WP_009327865.1 DNA internalization-related competence protein ComEC/Rec2 -
  IRJ22_RS08920 - 1694623..1695192 (-) 570 WP_003183690.1 ComE operon protein 2 -
  IRJ22_RS08925 comEA 1695261..1695890 (-) 630 WP_003183693.1 helix-hairpin-helix domain-containing protein Machinery gene
  IRJ22_RS08930 comER 1695974..1696795 (+) 822 WP_003183696.1 late competence protein ComER -
  IRJ22_RS08935 - 1696865..1697620 (-) 756 WP_003183697.1 class I SAM-dependent DNA methyltransferase -
  IRJ22_RS08940 rsfS 1697617..1697973 (-) 357 WP_003183699.1 ribosome silencing factor -
  IRJ22_RS08945 yqeK 1697987..1698550 (-) 564 WP_003183701.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  IRJ22_RS08950 - 1698540..1699109 (-) 570 WP_003183702.1 nicotinate-nucleotide adenylyltransferase -
  IRJ22_RS08955 yhbY 1699128..1699418 (-) 291 WP_003183704.1 ribosome assembly RNA-binding protein YhbY -
  IRJ22_RS08960 aroE 1699412..1700248 (-) 837 WP_003183706.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22468.42 Da        Isoelectric Point: 5.1890

>NTDB_id=499145 IRJ22_RS08925 WP_003183693.1 1695261..1695890(-) (comEA) [Bacillus licheniformis strain C5]
MTDWLKQYKWHAAGGVALVLIISAAFMLLSGKRETSSGLSIPEEASAQTYDKKEEVKREKSAGKEAVIIDLKGAVKNPGV
YQMKEGDRVHDVLKKAGGTEKKADQKQINLAAVLQDGMVVYIPFEGEEAADSFSKAGSRADGASVDIVNINTASSEELQA
IPGIGPSKAEAVIEYREENGPFHTVEDITNVSGIGEKSFERIKSAITVK

Nucleotide


Download         Length: 630 bp        

>NTDB_id=499145 IRJ22_RS08925 WP_003183693.1 1695261..1695890(-) (comEA) [Bacillus licheniformis strain C5]
TTGACAGATTGGCTAAAACAATATAAATGGCATGCTGCGGGAGGCGTTGCACTCGTCTTGATCATCAGCGCTGCCTTCAT
GCTGTTAAGCGGAAAGCGTGAAACTTCATCCGGCCTCTCCATTCCCGAGGAGGCTTCTGCACAGACGTATGACAAGAAGG
AGGAGGTGAAACGGGAAAAAAGCGCGGGAAAAGAGGCGGTTATCATCGATTTGAAAGGCGCTGTGAAAAATCCGGGCGTC
TATCAAATGAAAGAGGGAGACAGGGTCCACGATGTATTGAAAAAAGCAGGCGGCACCGAGAAAAAAGCGGATCAAAAGCA
AATTAACCTTGCAGCCGTTTTGCAGGACGGTATGGTGGTTTACATTCCATTTGAGGGGGAAGAGGCTGCTGATTCTTTCT
CGAAAGCGGGTTCAAGGGCAGATGGCGCTTCCGTCGATATCGTCAATATCAATACGGCTTCCTCTGAGGAGCTTCAGGCG
ATTCCCGGCATCGGCCCTTCAAAAGCGGAAGCGGTTATCGAATACCGCGAGGAGAACGGACCGTTTCACACGGTAGAAGA
CATAACAAACGTTTCGGGAATTGGAGAAAAGTCTTTTGAAAGAATAAAATCTGCAATCACGGTAAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(147-207)

SLBB domain (SLBB)

(69-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VQ77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

51.402

100

0.526