Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IRJ22_RS04345 Genome accession   NZ_CP064092
Coordinates   833608..834510 (+) Length   300 a.a.
NCBI ID   WP_003181744.1    Uniprot ID   A0A1Y0YS93
Organism   Bacillus licheniformis strain C5     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 828608..839510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS04325 - 829270..830958 (+) 1689 WP_011201650.1 hypothetical protein -
  IRJ22_RS04330 - 830955..831236 (+) 282 WP_003181737.1 FlhB-like flagellar biosynthesis protein -
  IRJ22_RS04335 sucC 831413..832573 (+) 1161 WP_003181739.1 ADP-forming succinate--CoA ligase subunit beta -
  IRJ22_RS04340 sucD 832592..833494 (+) 903 WP_009328521.1 succinate--CoA ligase subunit alpha -
  IRJ22_RS04345 dprA 833608..834510 (+) 903 WP_003181744.1 DNA-processing protein DprA Machinery gene
  IRJ22_RS04350 topA 834715..836790 (+) 2076 WP_003181746.1 type I DNA topoisomerase -
  IRJ22_RS04355 trmFO 836866..838170 (+) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  IRJ22_RS04360 xerC 838237..839151 (+) 915 WP_011197974.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33196.51 Da        Isoelectric Point: 10.2533

>NTDB_id=499129 IRJ22_RS04345 WP_003181744.1 833608..834510(+) (dprA) [Bacillus licheniformis strain C5]
MNDSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTGEKNHLLTKLSLKRSDLCSIRKLAEQELSNVKRLIRSYEAAGVRM
TAISSPDYPASLKTIHDPPPVLFLKGNKKLLHEQRLIGIVGTRCPSLYGKRAAVQLVRELCKNSWTIVSGLAKGIDGLAH
QESIRSKGRTIGVIAGGFNSIYPREHRQLAGQMAESHLLVSEHPPHIKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSFGPSRLIQEGAKLVLTIEDILNELPPSNAQYTEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=499129 IRJ22_RS04345 WP_003181744.1 833608..834510(+) (dprA) [Bacillus licheniformis strain C5]
ATGAACGACAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGACCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCTTTTAACGAAGCTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGGAACAAGAACTGTCTAATGTTAAACGGCTCATCCGTTCTTACGAGGCGGCCGGCGTCCGCATG
ACCGCCATATCTTCCCCTGATTATCCAGCCAGCCTGAAAACCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAAA
CAAAAAACTTCTCCATGAACAAAGACTGATCGGAATCGTCGGAACTCGCTGCCCGTCATTATACGGAAAAAGAGCTGCGG
TCCAGCTTGTCAGGGAGCTTTGCAAAAACAGCTGGACGATCGTCAGCGGTCTTGCAAAAGGAATTGACGGTCTCGCCCAT
CAGGAGAGCATCCGTTCAAAGGGAAGGACAATCGGCGTTATCGCGGGCGGATTCAACAGCATATATCCCCGTGAACATCG
CCAGCTCGCCGGACAAATGGCCGAAAGCCACCTGCTGGTATCAGAGCACCCTCCTCACATTAAACCGCAAAAATGGCATT
TTCCCATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAAGGCAAGGAAAAGAGCGGATCGCTC
ATTACAGCATACCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCGGGTCCGATCTTTGATGCCAACTCTTTCGG
TCCTTCAAGGCTGATCCAGGAAGGGGCGAAACTCGTATTAACTATTGAAGACATTTTGAACGAACTTCCGCCTTCAAACG
CTCAATATACAGAGCCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YS93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.525

99.667

0.573
  dprA Legionella pneumophila strain ERS1305867

39.404

100

0.397