Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IRJ22_RS03530 Genome accession   NZ_CP064092
Coordinates   670124..670411 (+) Length   95 a.a.
NCBI ID   WP_003181383.1    Uniprot ID   A0A1Y0YNS3
Organism   Bacillus licheniformis strain C5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 665124..675411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS03510 - 666770..667144 (+) 375 WP_003181373.1 YybH family protein -
  IRJ22_RS03515 - 667282..668514 (-) 1233 WP_011197946.1 aminopeptidase -
  IRJ22_RS03520 - 668605..668736 (-) 132 WP_003181378.1 protein YkpC -
  IRJ22_RS03525 mreBH 668810..669817 (-) 1008 WP_161658289.1 rod-share determining protein MreBH -
  IRJ22_RS03530 abrB 670124..670411 (+) 288 WP_003181383.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  IRJ22_RS03535 - 670579..671916 (+) 1338 WP_011197947.1 ATP-binding protein -
  IRJ22_RS03540 - 671981..672643 (+) 663 WP_003181388.1 potassium channel family protein -
  IRJ22_RS03545 ade 672771..674492 (+) 1722 WP_011197948.1 adenine deaminase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10554.41 Da        Isoelectric Point: 6.9823

>NTDB_id=499128 IRJ22_RS03530 WP_003181383.1 670124..670411(+) (abrB) [Bacillus licheniformis strain C5]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNGVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=499128 IRJ22_RS03530 WP_003181383.1 670124..670411(+) (abrB) [Bacillus licheniformis strain C5]
TTGAAAGCAATAGGAGTTGTGAGAAAAGTAGACGAACTCGGCAGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATCTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATCGTCCTGAAAAAATATAAACCGCACGGTGTGT
GTCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTATGGAAACGGGAAAATTACGCTCAGTCCTGAAGGGGCCGAA
TTGCTTTTGGAAGAAATCAAAGCTGCCTTAAACGGAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YNS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537