Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   IRJ22_RS03400 Genome accession   NZ_CP064092
Coordinates   645280..645870 (+) Length   196 a.a.
NCBI ID   WP_003181328.1    Uniprot ID   A0A1Y0YEF8
Organism   Bacillus licheniformis strain C5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 640280..650870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS03370 - 640585..641037 (+) 453 WP_369878864.1 flavodoxin -
  IRJ22_RS03375 dapD 641143..641853 (+) 711 WP_003181319.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  IRJ22_RS03380 - 641923..643047 (+) 1125 WP_003181321.1 N-acetyldiaminopimelate deacetylase -
  IRJ22_RS03385 - 643110..643355 (+) 246 WP_003181323.1 YkuS family protein -
  IRJ22_RS03390 ahpA 643650..644192 (+) 543 WP_003181325.1 biofilm-specific peroxidase AhpA -
  IRJ22_RS03395 - 644274..644732 (+) 459 WP_003181327.1 TlpA family protein disulfide reductase -
  IRJ22_RS03400 rok 645280..645870 (+) 591 WP_003181328.1 transcriptional regulator Rok Regulator
  IRJ22_RS03405 - 646017..646973 (-) 957 WP_009328583.1 hypothetical protein -
  IRJ22_RS03410 mobA 647126..647713 (+) 588 WP_003181331.1 molybdenum cofactor guanylyltransferase -
  IRJ22_RS03415 - 647819..648832 (+) 1014 WP_011197943.1 molybdopterin-synthase adenylyltransferase MoeB -
  IRJ22_RS03420 glp 648852..650144 (+) 1293 WP_003181335.1 gephyrin-like molybdotransferase Glp -
  IRJ22_RS03425 mobB 650111..650638 (+) 528 WP_003181336.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22665.62 Da        Isoelectric Point: 9.9960

>NTDB_id=499127 IRJ22_RS03400 WP_003181328.1 645280..645870(+) (rok) [Bacillus licheniformis strain C5]
MFNEREALRLRLEQLNEAEVKVIREYQIERDNIYAKLRELDRPSSFNDTKKDFRPERKTESLPVLAELAAQEMKSYQQQQ
QQQPQASQKNQQQTSPQTSSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPN
MTTFMQSLIKMYPEVKKPYRGQYILEGEISTETEQQ

Nucleotide


Download         Length: 591 bp        

>NTDB_id=499127 IRJ22_RS03400 WP_003181328.1 645280..645870(+) (rok) [Bacillus licheniformis strain C5]
ATGTTTAACGAGAGGGAAGCATTGCGTTTAAGATTAGAGCAGCTGAACGAGGCTGAAGTTAAGGTGATTAGGGAGTATCA
AATTGAGCGGGATAACATATATGCAAAGCTGCGTGAATTGGATCGTCCATCCAGCTTTAATGATACAAAAAAAGATTTTC
GCCCGGAGCGTAAAACTGAATCTCTCCCTGTTTTAGCTGAATTGGCTGCACAGGAGATGAAGAGCTACCAGCAACAGCAG
CAACAGCAGCCGCAAGCATCTCAAAAGAACCAGCAGCAGACTTCTCCGCAAACCTCCTCACTGCCTGCCGGAATTCCAGA
TGGAACGACAAGGCGCAGAAGGGGTACAGCACGTCCAGGCTCAAAAGCTGCAAAATTGCGTGAAGCGGCGATTAAAACAT
TAAAACGCCATAATGCGGCCATCAAAAGCTCCGAACTTCAAAAAGAAATCGAAAAAGAGAGCGGACTTGAGATCCCTAAT
ATGACAACCTTTATGCAAAGCCTGATTAAAATGTACCCGGAAGTCAAAAAACCATACCGCGGTCAATATATATTAGAGGG
TGAGATTTCTACTGAGACAGAGCAGCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YEF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

83.77

97.449

0.816