Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   IRJ22_RS02000 Genome accession   NZ_CP064092
Coordinates   387494..389323 (+) Length   609 a.a.
NCBI ID   WP_282334326.1    Uniprot ID   -
Organism   Bacillus licheniformis strain C5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 382494..394323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS01980 - 383691..384407 (-) 717 WP_009328827.1 response regulator -
  IRJ22_RS01985 - 384430..384660 (-) 231 WP_237562985.1 sensor histidine kinase -
  IRJ22_RS01990 - 384633..386015 (-) 1383 WP_237562984.1 PAS domain-containing protein -
  IRJ22_RS01995 - 386133..387281 (+) 1149 WP_161658291.1 competence protein CoiA family protein -
  IRJ22_RS02000 pepF 387494..389323 (+) 1830 WP_282334326.1 oligoendopeptidase F Regulator
  IRJ22_RS02005 - 389380..389547 (-) 168 WP_009328823.1 hypothetical protein -
  IRJ22_RS02010 spxH 389959..390861 (-) 903 WP_009328822.1 protease adaptor protein SpxH -
  IRJ22_RS02015 - 390858..391256 (-) 399 WP_003180652.1 thiol management oxidoreductase -
  IRJ22_RS02020 - 391538..392191 (-) 654 WP_009328821.1 lytic transglycosylase domain-containing protein -
  IRJ22_RS02025 - 392204..392776 (-) 573 WP_009328820.1 CYTH domain-containing protein -
  IRJ22_RS02030 - 392907..393272 (+) 366 WP_009328819.1 hypothetical protein -
  IRJ22_RS02035 - 393304..393939 (+) 636 WP_009328818.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70381.02 Da        Isoelectric Point: 4.8562

>NTDB_id=499123 IRJ22_RS02000 WP_282334326.1 387494..389323(+) (pepF) [Bacillus licheniformis strain C5]
MAEEKKSKKLPSREEVKQEDTWRLEDIFPSDDAWNEEFQAVKELLPKLSEFKGKLGHSADDLYEALTYQDKVMERLGKLY
TYAHMRYDQDTGNSFYQGLNDKAANLYTQAASATAYMVPEILSIQEEKLQQFLLEKEELKLYSHALEEINKERPHVLSEE
EEGILAEASDVLSSPSNTFGMLNNADMEFPEITDENGEKVQLTHGNYITFLESENRDVRRAAFKAVYETYGRFKNTLAST
LSGAVKKDNFYAKVKHYKSAREAALSRNSIPEEVYDNLVSTINKHLPLLHRYVEIRKKVLELDEVHMYDLYTPLVKDSGM
KVTYEQAKDYMLKGLAPLGEEYSSILKEGLNNRWVDVYENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTTNEALLGEYLLNTIEDEKQRLYILNHMLEGFKGTVFRQTMFAEFEHEIHVKAQ
EGEPLTPELLTSIYYDLNKKYFGDNIEIDKEIGLEWSRIPHFYYNYYVYQYATGFSAAQALSQQILKEGKSAVDRYIEFL
KAGSSDYPIEVLKKAGVDMTSSEPIEAACKKFEEQLNEMEELLQKVNHS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=499123 IRJ22_RS02000 WP_282334326.1 387494..389323(+) (pepF) [Bacillus licheniformis strain C5]
GTGGCTGAAGAAAAAAAATCGAAGAAACTGCCTTCAAGAGAAGAGGTGAAGCAAGAAGACACGTGGAGACTGGAGGATAT
CTTCCCGTCAGATGACGCTTGGAACGAGGAATTTCAAGCCGTTAAAGAACTGCTGCCCAAGCTTTCCGAATTCAAGGGCA
AGCTCGGCCATTCCGCCGATGATTTATATGAAGCGCTGACTTATCAGGATAAGGTGATGGAGCGTCTCGGGAAGCTGTAT
ACTTACGCTCATATGCGCTATGATCAGGATACGGGAAATTCTTTTTACCAAGGTCTCAATGATAAAGCGGCGAACCTCTA
TACTCAGGCTGCGAGCGCCACGGCCTACATGGTGCCGGAAATATTATCGATTCAGGAAGAAAAGCTTCAGCAGTTCCTGT
TGGAAAAAGAGGAATTAAAGCTTTACTCACACGCTCTCGAAGAAATCAATAAAGAGCGCCCTCATGTGCTTAGCGAGGAA
GAGGAAGGGATTTTGGCCGAAGCGTCTGATGTTCTTTCATCTCCTTCCAATACATTCGGCATGCTGAATAACGCCGATAT
GGAATTTCCGGAGATCACCGATGAAAACGGAGAAAAGGTGCAGCTCACACACGGCAATTATATCACCTTTTTGGAAAGCG
AGAACCGCGATGTCCGCCGCGCGGCATTCAAGGCCGTTTATGAAACATACGGCCGCTTTAAAAACACGCTAGCTTCCACG
CTCAGCGGAGCTGTGAAAAAAGACAACTTTTATGCGAAGGTTAAACATTATAAATCGGCGCGGGAAGCTGCCTTGTCGCG
CAACAGCATTCCTGAAGAAGTCTACGACAATCTTGTCAGCACGATCAACAAGCATCTCCCGCTTCTTCACCGCTATGTTG
AGATTAGAAAAAAAGTGCTTGAGCTTGATGAAGTGCACATGTATGACCTGTATACCCCTCTGGTCAAGGATTCTGGAATG
AAAGTCACTTACGAGCAGGCAAAGGACTATATGCTGAAGGGTCTGGCGCCTTTGGGGGAAGAATATTCATCCATCCTGAA
AGAAGGATTGAACAACCGCTGGGTCGATGTGTATGAAAACAAAGGAAAACGAAGCGGCGCCTATTCTTCAGGAACTTACG
GAACCAATCCGTATATTTTGATGAACTGGCAGGACAACGTCAACAATCTGTTTACGCTCGTCCATGAATTCGGCCATTCC
GTGCACAGCTACTATACGAGAAAATATCAGCCTTACCCGTACGGTAACTACAGCATTTTCGTAGCCGAAGTTGCTTCTAC
GACGAATGAAGCGCTGTTGGGAGAATACCTGCTGAATACAATCGAAGATGAAAAACAGCGGCTCTATATTTTGAATCATA
TGCTCGAAGGCTTTAAAGGAACGGTTTTCAGACAGACGATGTTTGCCGAATTTGAACATGAGATCCATGTCAAAGCCCAG
GAAGGGGAACCGCTGACACCTGAGCTGTTAACGAGCATATACTATGATTTGAATAAGAAATATTTCGGAGACAATATTGA
GATTGATAAGGAAATCGGTCTTGAGTGGTCAAGAATTCCGCATTTCTATTACAATTATTATGTATATCAGTATGCGACAG
GCTTCAGTGCAGCTCAGGCGCTCAGCCAGCAGATTTTAAAAGAAGGCAAATCGGCTGTTGACCGCTATATTGAGTTCTTG
AAAGCTGGAAGCTCGGATTATCCGATTGAAGTGCTGAAAAAAGCCGGCGTCGATATGACGTCTTCAGAGCCGATCGAAGC
TGCGTGCAAAAAGTTTGAAGAGCAGCTGAATGAAATGGAAGAACTCCTGCAAAAAGTCAATCATTCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.754

98.03

0.498