Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IRJ21_RS19955 Genome accession   NZ_CP064091
Coordinates   4025211..4025495 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain C1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4020211..4030495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ21_RS19935 - 4021454..4022362 (+) 909 WP_115940822.1 ketopantoate reductase family protein -
  IRJ21_RS19940 - 4022394..4023626 (-) 1233 WP_007409644.1 aminopeptidase -
  IRJ21_RS19945 - 4023727..4023861 (-) 135 WP_003154559.1 protein YkpC -
  IRJ21_RS19950 mreBH 4023933..4024940 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  IRJ21_RS19955 abrB 4025211..4025495 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  IRJ21_RS19960 - 4025668..4026972 (+) 1305 WP_095271806.1 ATP-binding protein -
  IRJ21_RS19965 - 4026974..4027801 (+) 828 WP_029973684.1 gamma-glutamylcyclotransferase family protein -
  IRJ21_RS19970 ktrC 4027842..4028507 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  IRJ21_RS19975 ade 4028656..4030389 (+) 1734 WP_029973685.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=499108 IRJ21_RS19955 WP_024085249.1 4025211..4025495(+) (abrB) [Bacillus velezensis strain C1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=499108 IRJ21_RS19955 WP_024085249.1 4025211..4025495(+) (abrB) [Bacillus velezensis strain C1]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543