Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   IRJ21_RS19845 Genome accession   NZ_CP064091
Coordinates   4004714..4005310 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain C1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3999714..4010310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ21_RS19815 - 3999928..4000383 (+) 456 WP_007409622.1 flavodoxin -
  IRJ21_RS19820 dapD 4000465..4001175 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  IRJ21_RS19825 - 4001246..4002370 (+) 1125 WP_017417680.1 N-acetyldiaminopimelate deacetylase -
  IRJ21_RS19830 - 4002431..4002676 (+) 246 WP_003154596.1 YkuS family protein -
  IRJ21_RS19835 - 4002710..4003516 (-) 807 WP_021493755.1 mechanosensitive ion channel family protein -
  IRJ21_RS19840 - 4003804..4004262 (+) 459 WP_017417682.1 TlpA disulfide reductase family protein -
  IRJ21_RS19845 rok 4004714..4005310 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  IRJ21_RS19850 - 4005331..4006323 (-) 993 WP_021493753.1 hypothetical protein -
  IRJ21_RS19855 - 4006469..4007071 (+) 603 WP_014417620.1 molybdenum cofactor guanylyltransferase -
  IRJ21_RS19860 - 4007123..4008142 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  IRJ21_RS19865 glp 4008160..4009452 (+) 1293 WP_022553413.1 gephyrin-like molybdotransferase Glp -
  IRJ21_RS19870 mobB 4009413..4009934 (+) 522 WP_029973679.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=499107 IRJ21_RS19845 WP_003154591.1 4004714..4005310(+) (rok) [Bacillus velezensis strain C1]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=499107 IRJ21_RS19845 WP_003154591.1 4004714..4005310(+) (rok) [Bacillus velezensis strain C1]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTAAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCGGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACGTTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843