Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   IRJ21_RS19745 Genome accession   NZ_CP064091
Coordinates   3988848..3989312 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain C1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3983848..3994312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ21_RS19725 - 3984329..3986149 (+) 1821 WP_242790546.1 PAS domain-containing protein -
  IRJ21_RS19730 - 3986174..3987343 (-) 1170 WP_007611083.1 aminotransferase A -
  IRJ21_RS19735 - 3987544..3987705 (-) 162 WP_099721949.1 hypothetical protein -
  IRJ21_RS19740 cheV 3987894..3988805 (+) 912 WP_029973673.1 chemotaxis protein CheV -
  IRJ21_RS19745 kre 3988848..3989312 (-) 465 WP_003154622.1 YkyB family protein Regulator
  IRJ21_RS19750 - 3989435..3990727 (-) 1293 WP_014417606.1 MFS transporter -
  IRJ21_RS19755 - 3990803..3991297 (-) 495 WP_088056573.1 L,D-transpeptidase family protein -
  IRJ21_RS19760 - 3991372..3992235 (-) 864 WP_182072651.1 metallophosphoesterase -
  IRJ21_RS19765 fadH 3992379..3993143 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  IRJ21_RS19770 - 3993257..3993814 (+) 558 WP_182072653.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=499106 IRJ21_RS19745 WP_003154622.1 3988848..3989312(-) (kre) [Bacillus velezensis strain C1]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=499106 IRJ21_RS19745 WP_003154622.1 3988848..3989312(-) (kre) [Bacillus velezensis strain C1]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929