Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   IRJ21_RS18250 Genome accession   NZ_CP064091
Coordinates   3711689..3712642 (+) Length   317 a.a.
NCBI ID   WP_014417407.1    Uniprot ID   A0AAP4DIE0
Organism   Bacillus velezensis strain C1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3706689..3717642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ21_RS18225 argF 3708506..3709477 (+) 972 WP_173613599.1 ornithine carbamoyltransferase -
  IRJ21_RS18230 - 3709553..3709732 (+) 180 WP_003155070.1 YjzC family protein -
  IRJ21_RS18235 - 3709769..3709954 (-) 186 WP_007409129.1 YjzD family protein -
  IRJ21_RS18240 - 3710215..3710949 (+) 735 WP_014417405.1 hypothetical protein -
  IRJ21_RS18245 - 3711032..3711598 (+) 567 WP_032863798.1 hypothetical protein -
  IRJ21_RS18250 med 3711689..3712642 (+) 954 WP_014417407.1 BMP family ABC transporter substrate-binding protein Regulator
  IRJ21_RS18255 comZ 3712655..3712846 (+) 192 WP_182072551.1 ComZ family protein Regulator
  IRJ21_RS18260 - 3712875..3713093 (-) 219 WP_007610579.1 hypothetical protein -
  IRJ21_RS18265 - 3713261..3714199 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  IRJ21_RS18270 fabF 3714222..3715460 (+) 1239 WP_025649581.1 beta-ketoacyl-ACP synthase II -
  IRJ21_RS18275 - 3715544..3716329 (+) 786 WP_012117278.1 DUF2268 domain-containing protein -
  IRJ21_RS18280 - 3716503..3717489 (+) 987 WP_025284553.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35343.93 Da        Isoelectric Point: 4.6686

>NTDB_id=499098 IRJ21_RS18250 WP_014417407.1 3711689..3712642(+) (med) [Bacillus velezensis strain C1]
MITRLVMTFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKNNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHNFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNRTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=499098 IRJ21_RS18250 WP_014417407.1 3711689..3712642(+) (med) [Bacillus velezensis strain C1]
TTGATCACCAGGCTTGTCATGACCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATTTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCACCTGATGGGAGAAGCAA
TGGGCTTTTTCGGGGGAATGACGGCCGCCCATATGTCAAAAAACAATGAGGTCGGCGTCATCGCCTCTTTTTTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGAGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACAACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCTCTGGTGGACA
AAGCATTTCAAGACAAAATCTCAGACCTTGTCAAAACGTATAACCGAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

77.918

100

0.779