Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   IRJ21_RS17890 Genome accession   NZ_CP064091
Coordinates   3643407..3643985 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain C1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3638407..3648985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ21_RS17870 - 3638907..3640199 (-) 1293 WP_014417354.1 globin-coupled sensor protein -
  IRJ21_RS17875 - 3640322..3641845 (-) 1524 WP_014417355.1 FAD-dependent oxidoreductase -
  IRJ21_RS17880 - 3641970..3642827 (+) 858 WP_095284619.1 SDR family oxidoreductase -
  IRJ21_RS17885 - 3642858..3643091 (-) 234 WP_007610478.1 IDEAL domain-containing protein -
  IRJ21_RS17890 comK 3643407..3643985 (+) 579 WP_003155179.1 competence protein ComK Regulator
  IRJ21_RS17895 - 3644131..3644499 (+) 369 WP_022553588.1 iron chaperone -
  IRJ21_RS17900 - 3644526..3644897 (+) 372 WP_110124619.1 iron chaperone -
  IRJ21_RS17905 - 3645020..3645529 (+) 510 WP_182072533.1 MepB family protein -
  IRJ21_RS17910 - 3645758..3646468 (-) 711 WP_029973179.1 YrpD family protein -
  IRJ21_RS17915 - 3646664..3646933 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  IRJ21_RS17920 - 3646966..3647283 (-) 318 WP_003155166.1 YbjQ family protein -
  IRJ21_RS17925 - 3647325..3648794 (-) 1470 WP_029973178.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=499095 IRJ21_RS17890 WP_003155179.1 3643407..3643985(+) (comK) [Bacillus velezensis strain C1]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=499095 IRJ21_RS17890 WP_003155179.1 3643407..3643985(+) (comK) [Bacillus velezensis strain C1]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCGCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGATACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGC
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAGGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823