Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IRJ21_RS12510 Genome accession   NZ_CP064091
Coordinates   2603568..2603858 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain C1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2598568..2608858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ21_RS12470 darA 2598586..2598915 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  IRJ21_RS12475 - 2598928..2599368 (+) 441 WP_017419499.1 DUF327 family protein -
  IRJ21_RS12480 holB 2599380..2600369 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  IRJ21_RS12485 ricT 2600372..2601199 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  IRJ21_RS12490 yabA 2601214..2601573 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  IRJ21_RS12495 - 2601634..2602377 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  IRJ21_RS12500 - 2602364..2602663 (+) 300 WP_099721929.1 GIY-YIG nuclease family protein -
  IRJ21_RS12505 rsmI 2602638..2603519 (+) 882 WP_014416718.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  IRJ21_RS12510 abrB 2603568..2603858 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  IRJ21_RS12515 metG 2604341..2606332 (+) 1992 WP_094296506.1 methionine--tRNA ligase -
  IRJ21_RS12520 - 2606409..2607176 (+) 768 WP_032864028.1 TatD family hydrolase -
  IRJ21_RS12525 - 2607311..2608636 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=499079 IRJ21_RS12510 WP_169510469.1 2603568..2603858(-) (abrB) [Bacillus velezensis strain C1]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=499079 IRJ21_RS12510 WP_169510469.1 2603568..2603858(-) (abrB) [Bacillus velezensis strain C1]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979