Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   IRJ21_RS10425 Genome accession   NZ_CP064091
Coordinates   2188369..2189514 (+) Length   381 a.a.
NCBI ID   WP_014419129.1    Uniprot ID   -
Organism   Bacillus velezensis strain C1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2183369..2194514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ21_RS10405 - 2183844..2184560 (-) 717 WP_007407631.1 Crp/Fnr family transcriptional regulator -
  IRJ21_RS10410 narK 2184658..2185848 (-) 1191 WP_007407632.1 nitrate transporter NarK -
  IRJ21_RS10415 argS 2185982..2187652 (-) 1671 WP_014419127.1 arginine--tRNA ligase -
  IRJ21_RS10420 - 2187649..2188077 (-) 429 WP_100262065.1 DUF1934 family protein -
  IRJ21_RS10425 rapF 2188369..2189514 (+) 1146 WP_014419129.1 tetratricopeptide repeat protein Regulator
  IRJ21_RS10430 - 2189498..2189617 (+) 120 WP_021494790.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  IRJ21_RS10435 - 2189815..2190018 (+) 204 WP_029972878.1 helix-turn-helix transcriptional regulator -
  IRJ21_RS10440 - 2190032..2190235 (+) 204 WP_007407641.1 hypothetical protein -
  IRJ21_RS10445 - 2190270..2190455 (+) 186 WP_014419130.1 DUF4177 domain-containing protein -
  IRJ21_RS10450 - 2190642..2190923 (+) 282 WP_014419131.1 hypothetical protein -
  IRJ21_RS10455 - 2190967..2191479 (+) 513 WP_014419132.1 stage II sporulation protein M -
  IRJ21_RS10460 - 2192067..2192285 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  IRJ21_RS10465 speB 2192438..2193310 (-) 873 WP_053285340.1 agmatinase -
  IRJ21_RS10470 speE 2193369..2194199 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45581.65 Da        Isoelectric Point: 4.5797

>NTDB_id=499073 IRJ21_RS10425 WP_014419129.1 2188369..2189514(+) (rapF) [Bacillus velezensis strain C1]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSELLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNTAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=499073 IRJ21_RS10425 WP_014419129.1 2188369..2189514(+) (rapF) [Bacillus velezensis strain C1]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGAGCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATACGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.215

100

0.782
  rapC Bacillus subtilis subsp. subtilis str. 168

57.105

99.738

0.57