Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   IRJ21_RS09510 Genome accession   NZ_CP064091
Coordinates   2006095..2006784 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain C1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2001095..2011784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ21_RS09475 - 2001293..2001775 (-) 483 WP_003151394.1 flagellar protein FlgN -
  IRJ21_RS09480 flgM 2001790..2002056 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  IRJ21_RS09485 - 2002126..2002545 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  IRJ21_RS09490 comFC 2002619..2003308 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  IRJ21_RS09495 - 2003314..2003598 (-) 285 WP_003151389.1 competence protein ComFB -
  IRJ21_RS09500 comFA 2003656..2005041 (-) 1386 WP_029972824.1 DEAD/DEAH box helicase Machinery gene
  IRJ21_RS09505 - 2005149..2005997 (-) 849 WP_003151387.1 DegV family protein -
  IRJ21_RS09510 degU 2006095..2006784 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IRJ21_RS09515 degS 2006861..2008024 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  IRJ21_RS09520 - 2008247..2008894 (+) 648 WP_007614107.1 YigZ family protein -
  IRJ21_RS09525 - 2008899..2010113 (+) 1215 WP_014419013.1 LCP family protein -
  IRJ21_RS09530 - 2010212..2011288 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=499068 IRJ21_RS09510 WP_003219701.1 2006095..2006784(-) (degU) [Bacillus velezensis strain C1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=499068 IRJ21_RS09510 WP_003219701.1 2006095..2006784(-) (degU) [Bacillus velezensis strain C1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1