Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   IRJ21_RS05625 Genome accession   NZ_CP064091
Coordinates   1226836..1227588 (-) Length   250 a.a.
NCBI ID   WP_029973370.1    Uniprot ID   A0AAP3YC33
Organism   Bacillus velezensis strain C1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1221836..1232588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ21_RS05600 mreC 1222272..1223135 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  IRJ21_RS05605 mreB 1223166..1224179 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  IRJ21_RS05610 radC 1224271..1224966 (-) 696 WP_007408165.1 DNA repair protein RadC -
  IRJ21_RS05615 - 1224998..1225567 (-) 570 WP_012118105.1 Maf family protein -
  IRJ21_RS05620 - 1225708..1226709 (-) 1002 WP_022552880.1 SPOR domain-containing protein -
  IRJ21_RS05625 comC 1226836..1227588 (-) 753 WP_029973370.1 A24 family peptidase Machinery gene
  IRJ21_RS05630 - 1227728..1229020 (-) 1293 WP_029973369.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  IRJ21_RS05635 - 1229079..1231721 (-) 2643 WP_014418550.1 valine--tRNA ligase -
  IRJ21_RS05640 - 1232174..1232365 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27257.97 Da        Isoelectric Point: 9.4293

>NTDB_id=499057 IRJ21_RS05625 WP_029973370.1 1226836..1227588(-) (comC) [Bacillus velezensis strain C1]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTTAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLPLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=499057 IRJ21_RS05625 WP_029973370.1 1226836..1227588(-) (comC) [Bacillus velezensis strain C1]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAACTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGACAGCAGGCATTCATTTCGGTTTCTCGAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACCGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATACATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGCCGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.065

99.2

0.576