Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   IRJ21_RS04750 Genome accession   NZ_CP064091
Coordinates   1059666..1060433 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain C1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1054666..1065433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ21_RS04730 - 1054868..1055680 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  IRJ21_RS04735 ccpN 1055706..1056344 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  IRJ21_RS04740 glyS 1056445..1058484 (-) 2040 WP_173613469.1 glycine--tRNA ligase subunit beta -
  IRJ21_RS04745 glyQ 1058477..1059364 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  IRJ21_RS04750 recO 1059666..1060433 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  IRJ21_RS04755 - 1060470..1060613 (-) 144 WP_007408286.1 YqzL family protein -
  IRJ21_RS04760 era 1060769..1061674 (-) 906 WP_007408285.1 GTPase Era -
  IRJ21_RS04765 - 1061655..1062065 (-) 411 WP_017418172.1 cytidine deaminase -
  IRJ21_RS04770 - 1062189..1062563 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  IRJ21_RS04775 ybeY 1062544..1063017 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  IRJ21_RS04780 - 1063018..1065150 (-) 2133 WP_053284931.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=499050 IRJ21_RS04750 WP_007408287.1 1059666..1060433(-) (recO) [Bacillus velezensis strain C1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=499050 IRJ21_RS04750 WP_007408287.1 1059666..1060433(-) (recO) [Bacillus velezensis strain C1]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATACTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89