Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EC042_RS05470 Genome accession   NC_017626
Coordinates   1128619..1129248 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli 042     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1123619..1134248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC042_RS05445 (EC042_1040) ycbZ 1124008..1125768 (-) 1761 WP_000156480.1 Lon protease family protein -
  EC042_RS05450 (EC042_1041) matP 1125954..1126406 (+) 453 WP_000877166.1 macrodomain Ter protein MatP -
  EC042_RS05455 (EC042_1042) ompA 1126482..1127534 (-) 1053 WP_014639122.1 porin OmpA -
  EC042_RS05465 (EC042_1044) sulA 1127891..1128400 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EC042_RS05470 (EC042_1045) sxy/tfoX 1128619..1129248 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EC042_RS05475 (EC042_1046) yccS 1129211..1131373 (-) 2163 WP_000875037.1 YccS family putative transporter -
  EC042_RS05480 (EC042_1047) yccF 1131383..1131829 (-) 447 WP_001261235.1 YccF domain-containing protein -
  EC042_RS05485 (EC042_1048) helD 1131952..1134006 (+) 2055 WP_014639123.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=49905 EC042_RS05470 WP_000839153.1 1128619..1129248(+) (sxy/tfoX) [Escherichia coli 042]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=49905 EC042_RS05470 WP_000839153.1 1128619..1129248(+) (sxy/tfoX) [Escherichia coli 042]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment