Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   IRJ17_RS15500 Genome accession   NZ_CP064090
Coordinates   3234035..3234421 (-) Length   128 a.a.
NCBI ID   WP_229049957.1    Uniprot ID   -
Organism   Brevibacillus parabrevis strain B3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3229035..3239421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ17_RS15485 - 3229559..3230368 (+) 810 WP_242771064.1 energy-coupling factor transporter transmembrane component T -
  IRJ17_RS15490 - 3230410..3232278 (+) 1869 WP_122965104.1 ABC transporter ATP-binding protein -
  IRJ17_RS15495 - 3232247..3233983 (+) 1737 WP_173599666.1 ABC transporter ATP-binding protein -
  IRJ17_RS15500 nucA/comI 3234035..3234421 (-) 387 WP_229049957.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  IRJ17_RS15505 - 3234684..3236000 (-) 1317 WP_242771065.1 MFS transporter -
  IRJ17_RS15510 - 3236216..3237814 (+) 1599 WP_173598052.1 amidohydrolase -
  IRJ17_RS15515 - 3237966..3238853 (-) 888 WP_242771066.1 DMT family transporter -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14265.85 Da        Isoelectric Point: 6.4672

>NTDB_id=499017 IRJ17_RS15500 WP_229049957.1 3234035..3234421(-) (nucA/comI) [Brevibacillus parabrevis strain B3]
MLTEQQNSQTTNTSVQADVVLTFPRERYPETAEHIRSAIEKGQSAVCTIDRKSADKHREDSLRGIPTKRGYDRDEWPMAM
CKEGGKGADIAYISPSDNRGAGSWIANQLEKYPDGTRVQIVIGDQPAR

Nucleotide


Download         Length: 387 bp        

>NTDB_id=499017 IRJ17_RS15500 WP_229049957.1 3234035..3234421(-) (nucA/comI) [Brevibacillus parabrevis strain B3]
CTGTTAACCGAGCAACAGAACAGCCAGACCACAAACACGTCTGTGCAAGCCGATGTCGTTCTGACCTTTCCCCGCGAGCG
CTATCCCGAGACGGCAGAGCACATTCGCTCTGCCATCGAAAAAGGCCAGTCTGCTGTCTGCACCATCGACCGCAAATCGG
CGGACAAGCACCGCGAAGATTCCTTGCGCGGCATCCCGACCAAACGCGGCTACGATCGCGACGAATGGCCGATGGCAATG
TGCAAGGAAGGCGGCAAGGGAGCAGATATCGCTTATATTTCCCCTTCCGACAACCGCGGGGCAGGTTCGTGGATCGCCAA
CCAGCTCGAAAAGTACCCGGATGGCACGCGCGTGCAAATCGTCATCGGCGATCAGCCTGCCCGCTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(24-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

59.649

89.063

0.531