Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   IRJ17_RS05620 Genome accession   NZ_CP064090
Coordinates   1161321..1162274 (+) Length   317 a.a.
NCBI ID   WP_122962424.1    Uniprot ID   -
Organism   Brevibacillus parabrevis strain B3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1156321..1167274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ17_RS05595 - 1157004..1157360 (-) 357 WP_122962419.1 response regulator -
  IRJ17_RS05600 - 1157552..1157914 (-) 363 WP_122962420.1 carboxymuconolactone decarboxylase family protein -
  IRJ17_RS05605 - 1158006..1158674 (-) 669 WP_242773627.1 Crp/Fnr family transcriptional regulator -
  IRJ17_RS05610 - 1158795..1160207 (+) 1413 WP_242773629.1 MATE family efflux transporter -
  IRJ17_RS05615 - 1160310..1161059 (+) 750 WP_122962423.1 DUF4097 family beta strand repeat-containing protein -
  IRJ17_RS05620 ceuB 1161321..1162274 (+) 954 WP_122962424.1 ABC transporter permease Machinery gene
  IRJ17_RS05625 - 1162271..1163212 (+) 942 WP_063228791.1 iron chelate uptake ABC transporter family permease subunit -
  IRJ17_RS05630 - 1163209..1163967 (+) 759 WP_122962425.1 ABC transporter ATP-binding protein -
  IRJ17_RS05635 - 1164082..1165062 (+) 981 WP_242773631.1 siderophore ABC transporter substrate-binding protein -
  IRJ17_RS05640 - 1165195..1166070 (-) 876 WP_122962427.1 ABC transporter ATP-binding protein -
  IRJ17_RS05645 - 1166271..1166570 (-) 300 WP_063228795.1 YxcD family protein -
  IRJ17_RS05650 - 1166558..1166995 (-) 438 WP_063228796.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35138.51 Da        Isoelectric Point: 9.7949

>NTDB_id=499002 IRJ17_RS05620 WP_122962424.1 1161321..1162274(+) (ceuB) [Brevibacillus parabrevis strain B3]
MKKRYLVVALILLSIVSLFIGVKDISPLELFNLSDDKVQVMWISRIPRLISIIIAGISMSVVGLIMQQLTRNKFVSPTTA
GTEDSVRFGILVSLLVFVDASIWVKLLVAFVFALLGTFIFMKILDRVKYKDSIFIPLVGLMFGNIVGSITMFFAYKHDLI
QNMSSWLHGDFSSIMKGNYELLYISIPLVIIAYLFANKFTIAGMGEEFAINLGLNYKQVVNIGLAIVAMVSSVVILTVGT
IPFLGLIIPNIVTLYLGDNLKKSLSHTALLGAVFVLCCDILGRLIIFPYEISIGLMVGVVGSGIFVYLLMRRKAYER

Nucleotide


Download         Length: 954 bp        

>NTDB_id=499002 IRJ17_RS05620 WP_122962424.1 1161321..1162274(+) (ceuB) [Brevibacillus parabrevis strain B3]
ATGAAAAAAAGATATTTGGTTGTAGCCCTGATTCTGCTTTCGATAGTATCCCTGTTTATTGGCGTAAAGGACATTTCGCC
CCTGGAGTTGTTCAATCTCAGCGATGACAAAGTGCAAGTGATGTGGATTAGCCGGATTCCCCGATTGATCAGTATCATTA
TCGCGGGTATCAGCATGAGCGTGGTTGGTCTGATCATGCAGCAACTGACCCGGAACAAATTCGTGTCGCCGACAACGGCG
GGCACCGAAGACTCTGTCCGGTTCGGGATTCTCGTTTCCTTGCTGGTGTTCGTAGATGCTTCGATTTGGGTGAAGCTGCT
CGTCGCGTTTGTTTTTGCCTTGCTGGGGACGTTTATCTTCATGAAGATTCTCGACAGGGTAAAATACAAGGATTCGATTT
TTATTCCACTGGTCGGGTTGATGTTCGGGAATATCGTCGGTTCGATTACGATGTTTTTCGCTTACAAGCACGATCTCATC
CAAAACATGTCGTCCTGGCTGCACGGCGACTTTTCCTCGATCATGAAGGGAAACTACGAATTGCTATACATAAGCATTCC
GCTGGTCATTATCGCGTACTTGTTTGCCAACAAGTTTACGATTGCAGGAATGGGCGAAGAGTTCGCGATCAATCTCGGAC
TGAATTACAAGCAAGTGGTCAATATCGGTTTGGCGATTGTCGCCATGGTTTCATCTGTCGTCATCCTCACGGTAGGGACG
ATCCCGTTTTTGGGGCTTATTATTCCTAATATTGTGACGCTTTACCTCGGCGACAATCTGAAGAAAAGCCTGTCTCATAC
CGCTTTGCTGGGAGCAGTGTTTGTCTTGTGCTGTGACATTCTTGGACGCCTGATCATCTTCCCGTATGAAATCTCAATCG
GCTTGATGGTCGGAGTAGTGGGCAGCGGTATATTCGTGTACTTACTCATGAGAAGAAAGGCATATGAACGATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.633

98.738

0.539