Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   IRB21_RS14390 Genome accession   NZ_CP064089
Coordinates   2775178..2775948 (-) Length   256 a.a.
NCBI ID   WP_007501304.1    Uniprot ID   -
Organism   Bacillus altitudinis strain N435-3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2770178..2780948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB21_RS14370 - 2770271..2771092 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  IRB21_RS14375 - 2771118..2771756 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  IRB21_RS14380 glyS 2771923..2773968 (-) 2046 WP_017367621.1 glycine--tRNA ligase subunit beta -
  IRB21_RS14385 glyQ 2773961..2774848 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  IRB21_RS14390 recO 2775178..2775948 (-) 771 WP_007501304.1 DNA repair protein RecO Machinery gene
  IRB21_RS14395 - 2775984..2776127 (-) 144 WP_008342408.1 YqzL family protein -
  IRB21_RS14400 era 2776275..2777180 (-) 906 WP_007501305.1 GTPase Era -
  IRB21_RS14405 - 2777173..2777571 (-) 399 WP_008342410.1 cytidine deaminase -
  IRB21_RS14410 - 2777684..2778070 (-) 387 WP_242730675.1 diacylglycerol kinase family protein -
  IRB21_RS14415 ybeY 2778048..2778527 (-) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  IRB21_RS14420 - 2778528..2780618 (-) 2091 WP_242732075.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29345.04 Da        Isoelectric Point: 8.4348

>NTDB_id=498972 IRB21_RS14390 WP_007501304.1 2775178..2775948(-) (recO) [Bacillus altitudinis strain N435-3]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=498972 IRB21_RS14390 WP_007501304.1 2775178..2775948(-) (recO) [Bacillus altitudinis strain N435-3]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACTGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758