Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   IRB21_RS13860 Genome accession   NZ_CP064089
Coordinates   2682285..2683088 (-) Length   267 a.a.
NCBI ID   WP_008342226.1    Uniprot ID   A0A5K1NAR3
Organism   Bacillus altitudinis strain N435-3     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2677285..2688088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB21_RS13840 - 2677292..2679364 (-) 2073 WP_025207603.1 sigma-54-dependent Fis family transcriptional regulator -
  IRB21_RS13845 - 2679514..2679750 (+) 237 WP_017357960.1 DUF2627 domain-containing protein -
  IRB21_RS13850 - 2679784..2680521 (-) 738 WP_017367573.1 glycerophosphodiester phosphodiesterase -
  IRB21_RS13855 - 2680748..2681848 (-) 1101 WP_007501159.1 Rap family tetratricopeptide repeat protein -
  IRB21_RS13860 spo0A 2682285..2683088 (-) 804 WP_008342226.1 sporulation transcription factor Spo0A Regulator
  IRB21_RS13865 spoIVB 2683372..2684649 (-) 1278 WP_007501161.1 SpoIVB peptidase -
  IRB21_RS13870 recN 2684848..2686581 (-) 1734 WP_008342224.1 DNA repair protein RecN Machinery gene
  IRB21_RS13875 argR 2686616..2687065 (-) 450 WP_007501163.1 transcriptional regulator ArgR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29891.41 Da        Isoelectric Point: 6.3918

>NTDB_id=498967 IRB21_RS13860 WP_008342226.1 2682285..2683088(-) (spo0A) [Bacillus altitudinis strain N435-3]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVSHRSSSIQNSVLRSKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=498967 IRB21_RS13860 WP_008342226.1 2682285..2683088(-) (spo0A) [Bacillus altitudinis strain N435-3]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAACTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGAAATGACCAAACAG
CCAAGTGTCATTATGCTGACGGCTTTCGGACAAGAAGACGTAACGAAAAAAGCAGTCGATTTGGGCGCATCCTATTTCAT
TTTGAAACCATTCGATATGGAAAACCTCGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCAGCCATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGCAGCAAACCTGAACCGAAACGTAAGAACTTAGATGCGAGCATTACGACGATT
ATTCATGAGATTGGCGTGCCAGCTCATATTAAAGGTTATTTATACTTAAGAGAAGCCATTTCGATGGTGTACAATGATAT
TGAACTACTCGGCAGTATTACAAAAGTATTGTACCCAGACATTGCAAAGAAATTTAACACGACAGCCAGCAGGGTAGAAC
GAGCGATTCGCCATGCCATTGAAGTGGCTTGGAGTAGAGGGAATATTGACTCCATTTCGTCACTCTTTGGCTACACAGTC
AGCATGTCAAAAGCCAAACCGACCAATTCCGAATTTATTGCCATGGTGGCTGATCGTCTGCGTTTAGAGCATAGAGCAAG
CTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-120)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884