Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   IRB21_RS12915 Genome accession   NZ_CP064089
Coordinates   2511056..2511691 (+) Length   211 a.a.
NCBI ID   WP_017359733.1    Uniprot ID   A0A653S7S4
Organism   Bacillus altitudinis strain N435-3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2506056..2516691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB21_RS12875 - 2506218..2507336 (+) 1119 WP_025207530.1 NADH-dependent flavin oxidoreductase -
  IRB21_RS12880 - 2507388..2507894 (-) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  IRB21_RS12885 - 2508063..2508482 (+) 420 WP_017359728.1 Hsp20/alpha crystallin family protein -
  IRB21_RS12890 - 2508504..2508956 (-) 453 WP_017359729.1 YppG family protein -
  IRB21_RS12895 - 2509065..2509436 (-) 372 WP_017359730.1 YppE family protein -
  IRB21_RS12900 - 2509495..2509731 (-) 237 WP_008344612.1 DUF5446 family protein -
  IRB21_RS12905 sspM 2509925..2510029 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  IRB21_RS12910 - 2510053..2511009 (-) 957 WP_017359732.1 DUF2515 domain-containing protein -
  IRB21_RS12915 recU 2511056..2511691 (+) 636 WP_017359733.1 Holliday junction resolvase RecU Machinery gene
  IRB21_RS12920 - 2511711..2514395 (+) 2685 WP_242730598.1 PBP1A family penicillin-binding protein -
  IRB21_RS12925 - 2514431..2514940 (-) 510 WP_025207533.1 YpoC family protein -
  IRB21_RS12930 nth 2514937..2515599 (-) 663 WP_008344602.1 endonuclease III -
  IRB21_RS12935 - 2515617..2516321 (-) 705 WP_242730600.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24314.60 Da        Isoelectric Point: 9.6582

>NTDB_id=498966 IRB21_RS12915 WP_017359733.1 2511056..2511691(+) (recU) [Bacillus altitudinis strain N435-3]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=498966 IRB21_RS12915 WP_017359733.1 2511056..2511691(+) (recU) [Bacillus altitudinis strain N435-3]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATTGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGAAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653S7S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697