Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   IRB21_RS11530 Genome accession   NZ_CP064089
Coordinates   2236635..2237015 (+) Length   126 a.a.
NCBI ID   WP_240504399.1    Uniprot ID   -
Organism   Bacillus altitudinis strain N435-3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2231635..2242015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB21_RS11520 - 2233354..2234262 (+) 909 WP_017359587.1 trypsin-like serine protease -
  IRB21_RS11525 - 2234409..2236403 (+) 1995 WP_242730473.1 glycosyltransferase family 39 protein -
  IRB21_RS11530 nucA/comI 2236635..2237015 (+) 381 WP_240504399.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  IRB21_RS11535 - 2237159..2238007 (+) 849 WP_017359585.1 STAS domain-containing protein -
  IRB21_RS11540 - 2238040..2238582 (-) 543 WP_007499353.1 IseA DL-endopeptidase inhibitor family protein -
  IRB21_RS11545 - 2238879..2239322 (+) 444 WP_008343821.1 hypothetical protein -
  IRB21_RS11550 lexA 2239370..2239990 (-) 621 WP_242730475.1 transcriptional repressor LexA -
  IRB21_RS11555 yneA 2240150..2240461 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  IRB21_RS11560 - 2240479..2241126 (+) 648 WP_025207396.1 recombinase family protein -
  IRB21_RS11565 - 2241196..2241426 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13742.43 Da        Isoelectric Point: 8.4955

>NTDB_id=498965 IRB21_RS11530 WP_240504399.1 2236635..2237015(+) (nucA/comI) [Bacillus altitudinis strain N435-3]
MGVLLGGFGEGRSAKGADRYEHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=498965 IRB21_RS11530 WP_240504399.1 2236635..2237015(+) (nucA/comI) [Bacillus altitudinis strain N435-3]
ATGGGTGTGTTATTAGGTGGTTTTGGAGAGGGTCGTTCCGCAAAAGGAGCAGATCGTTATGAACATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCAGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.143

94.444

0.54