Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   IRB21_RS08635 Genome accession   NZ_CP064089
Coordinates   1703539..1703817 (+) Length   92 a.a.
NCBI ID   WP_008345129.1    Uniprot ID   A0AAD0MKH3
Organism   Bacillus altitudinis strain N435-3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1698539..1708817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB21_RS08610 - 1698632..1698907 (-) 276 WP_008345136.1 hypothetical protein -
  IRB21_RS08615 - 1699052..1700671 (+) 1620 WP_019743117.1 ATP-binding cassette domain-containing protein -
  IRB21_RS08620 - 1700712..1701944 (-) 1233 WP_008345134.1 aminopeptidase -
  IRB21_RS08625 - 1702049..1702180 (-) 132 WP_003210922.1 protein YkpC -
  IRB21_RS08630 mreBH 1702255..1703262 (-) 1008 WP_017359401.1 rod-share determining protein MreBH -
  IRB21_RS08635 abrB 1703539..1703817 (+) 279 WP_008345129.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  IRB21_RS08640 - 1703962..1705251 (+) 1290 WP_242731954.1 ATP-binding protein -
  IRB21_RS08645 - 1705279..1706121 (+) 843 WP_242731956.1 gamma-glutamylcyclotransferase family protein -
  IRB21_RS08650 - 1706159..1706827 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10320.00 Da        Isoelectric Point: 4.5447

>NTDB_id=498960 IRB21_RS08635 WP_008345129.1 1703539..1703817(+) (abrB) [Bacillus altitudinis strain N435-3]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGEKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=498960 IRB21_RS08635 WP_008345129.1 1703539..1703817(+) (abrB) [Bacillus altitudinis strain N435-3]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGAGAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GCCTGATGACTGGCGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

100

0.554