Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   IRB21_RS08405 Genome accession   NZ_CP064089
Coordinates   1665045..1665506 (-) Length   153 a.a.
NCBI ID   WP_007498684.1    Uniprot ID   A0A9X0FXQ0
Organism   Bacillus altitudinis strain N435-3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1660045..1670506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB21_RS08380 - 1660648..1661532 (+) 885 WP_017359428.1 cation diffusion facilitator family transporter -
  IRB21_RS08385 - 1661598..1661750 (-) 153 WP_017367142.1 hypothetical protein -
  IRB21_RS08390 - 1662051..1662590 (+) 540 WP_007498690.1 RDD family protein -
  IRB21_RS08395 - 1662716..1664026 (+) 1311 WP_242731923.1 MFS transporter -
  IRB21_RS08400 - 1664100..1665008 (+) 909 WP_024719666.1 chemotaxis protein -
  IRB21_RS08405 kre 1665045..1665506 (-) 462 WP_007498684.1 YkyB family protein Regulator
  IRB21_RS08410 - 1665984..1666199 (-) 216 WP_058337408.1 hypothetical protein -
  IRB21_RS08415 - 1666365..1666541 (+) 177 WP_162837046.1 hypothetical protein -
  IRB21_RS08420 - 1666606..1667883 (-) 1278 WP_242731925.1 MFS transporter -
  IRB21_RS08425 - 1667957..1668454 (-) 498 WP_024719572.1 L,D-transpeptidase family protein -
  IRB21_RS08430 - 1668611..1669468 (-) 858 WP_242731927.1 metallophosphoesterase -
  IRB21_RS08435 fadH 1669608..1670372 (+) 765 WP_019743904.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17739.31 Da        Isoelectric Point: 10.2617

>NTDB_id=498958 IRB21_RS08405 WP_007498684.1 1665045..1665506(-) (kre) [Bacillus altitudinis strain N435-3]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPRYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=498958 IRB21_RS08405 WP_007498684.1 1665045..1665506(-) (kre) [Bacillus altitudinis strain N435-3]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAGATATAGTCAACAACAGTCCGACGTGCTGATTGAAATCGGAGAT
TATTATTTTCATCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAATCGAGCAAAACAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTATACAAAACCCGTCTTCAAACGGCTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771