Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   IRB21_RS07280 Genome accession   NZ_CP064089
Coordinates   1461717..1463543 (+) Length   608 a.a.
NCBI ID   WP_282706805.1    Uniprot ID   -
Organism   Bacillus altitudinis strain N435-3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1456717..1468543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB21_RS07260 - 1456978..1457643 (-) 666 WP_007499010.1 TerC family protein -
  IRB21_RS07265 mecA 1457908..1458573 (+) 666 WP_008348474.1 adaptor protein MecA Regulator
  IRB21_RS07270 cls 1458659..1460179 (+) 1521 WP_008348473.1 cardiolipin synthase -
  IRB21_RS07275 - 1460342..1461502 (+) 1161 WP_135226778.1 competence protein CoiA family protein -
  IRB21_RS07280 pepF 1461717..1463543 (+) 1827 WP_282706805.1 oligoendopeptidase F Regulator
  IRB21_RS07285 - 1463831..1464004 (-) 174 WP_008348466.1 hypothetical protein -
  IRB21_RS07290 - 1464301..1465212 (-) 912 WP_007499002.1 ClpXP adapter SpxH family protein -
  IRB21_RS07295 - 1465209..1465607 (-) 399 WP_007499001.1 thiol management oxidoreductase -
  IRB21_RS07300 - 1465885..1466649 (-) 765 WP_008348461.1 lytic transglycosylase domain-containing protein -
  IRB21_RS07305 - 1466675..1467250 (-) 576 WP_007498999.1 CYTH domain-containing protein -
  IRB21_RS07310 - 1467468..1467833 (+) 366 WP_008348459.1 hypothetical protein -
  IRB21_RS07315 - 1467867..1468496 (+) 630 WP_008348457.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70283.94 Da        Isoelectric Point: 5.2858

>NTDB_id=498954 IRB21_RS07280 WP_282706805.1 1461717..1463543(+) (pepF) [Bacillus altitudinis strain N435-3]
MTSQNNNNHLPDRSEVKEENKWRLEDIFESVDSWNKEFEAVKKEIPKLAQFKGKLAHSADVLYEALTFQDQLSEKLGKLY
TYAHMKYDEDTTNSSFQALNDKASNLFTQLSSTSAYIVPEILSIQEDKLQQFILEKEELKLYSHALEEINKERPHILSEE
QEALLAEASEPLSTSSTTFSMFNNADISFPSVKDENGEEKKITHGNFITFLNSDDREVRKNAFKAVYKTYDQYKNTLAST
LSGSIKKDNFYAKVRHYKSAREAALSRNSIPEEVYDNLIDTVHQYLPLLHRYIELRKKVLKLDEVHNYDLYTPLVKDAGM
KLTYDEAKDYMLKGLAPLGEEYVSVLKEGLENRWVDVYENKGKRSGAYSSGSYGTNPYILMNWQNNIDNLFTLAHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNHLEDKKQRLYVLNHLLEGFRGTVFRQTMFAEFEHLIHVKAQ
EGEALTPEFMTNLYYDLNKKYFGDGMVVDKEIGLEWTRIPHFYYNYYVYQYATGYSAAQALSKQILEEGKPAVERYTDFL
KAGSSDYPINVLKKAGVDMASKEPIEAACQLFEEKLKEMEELISKTGE

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=498954 IRB21_RS07280 WP_282706805.1 1461717..1463543(+) (pepF) [Bacillus altitudinis strain N435-3]
ATGACTTCACAAAATAACAACAATCATTTACCAGACAGAAGCGAAGTAAAAGAAGAAAACAAATGGCGCCTTGAAGATAT
TTTTGAAAGTGTCGATTCTTGGAATAAGGAATTCGAAGCTGTAAAAAAAGAAATTCCGAAGCTCGCCCAATTTAAAGGCA
AGCTGGCCCATTCTGCTGATGTCTTGTATGAAGCCCTAACATTTCAGGATCAACTTTCTGAAAAGCTTGGCAAGCTTTAT
ACATATGCGCATATGAAATATGATGAAGATACAACAAATTCATCATTTCAGGCTTTAAATGATAAAGCATCCAATTTATT
TACACAGCTGTCTAGTACATCTGCCTATATTGTTCCGGAGATTTTATCTATTCAAGAAGATAAGCTGCAGCAATTCATTT
TGGAAAAAGAAGAATTAAAACTTTATTCTCACGCTCTCGAAGAAATTAACAAAGAGCGTCCGCATATTTTAAGTGAAGAG
CAAGAAGCTTTATTAGCTGAAGCCTCTGAACCTTTATCAACATCATCCACTACGTTTAGTATGTTTAATAATGCAGATAT
TTCGTTCCCTTCTGTTAAGGATGAAAATGGAGAAGAAAAGAAAATTACTCATGGCAACTTCATTACCTTTTTAAACAGTG
ATGATCGTGAAGTGAGAAAGAATGCTTTTAAAGCCGTTTATAAAACGTATGATCAGTATAAGAATACTTTGGCGTCTACA
CTCAGCGGCTCGATTAAAAAGGATAATTTTTATGCGAAAGTACGTCATTACAAATCGGCAAGAGAAGCAGCGTTATCACG
CAACAGTATTCCTGAAGAAGTGTATGACAATCTAATTGATACAGTTCATCAATATTTACCGTTATTACACCGCTACATTG
AATTGCGTAAAAAGGTATTAAAGCTTGATGAAGTGCACAATTATGACTTGTATACACCATTAGTAAAAGATGCTGGCATG
AAGCTGACCTATGATGAAGCAAAGGATTATATGCTGAAAGGGTTAGCGCCATTAGGAGAAGAATATGTTTCGGTATTAAA
AGAGGGACTCGAAAATCGCTGGGTAGACGTTTATGAGAATAAAGGGAAACGAAGCGGCGCGTATTCTTCTGGAAGCTATG
GTACAAATCCTTATATCTTAATGAACTGGCAAAATAATATTGATAATTTATTTACGCTGGCTCATGAATTTGGTCACTCT
GTTCATAGCTACTATACAAGAAAGCATCAGCCATATCCGTACGGAAACTACAGCATTTTTGTAGCGGAAGTAGCTTCTAC
AACAAATGAAGCATTACTAGGCGAATACTTACTCAATCATTTAGAGGACAAAAAGCAGCGCTTGTATGTGCTCAATCACT
TGTTAGAAGGATTTAGAGGGACTGTATTCAGACAAACGATGTTTGCAGAGTTCGAGCACCTGATTCATGTGAAAGCGCAA
GAAGGGGAGGCATTAACGCCAGAGTTTATGACGAACCTGTATTACGACCTGAATAAGAAGTATTTTGGCGACGGTATGGT
TGTGGATAAGGAAATCGGATTAGAATGGACGCGAATTCCGCATTTCTATTACAACTATTATGTGTATCAATATGCGACAG
GCTATAGTGCGGCTCAGGCATTAAGTAAACAAATTTTAGAAGAAGGGAAACCTGCGGTGGAGCGTTATACAGACTTCCTT
AAAGCAGGAAGCTCTGACTATCCAATCAACGTGCTGAAAAAAGCTGGTGTAGATATGGCATCGAAAGAACCAATTGAGGC
AGCATGTCAATTGTTTGAAGAAAAATTAAAGGAAATGGAAGAGCTCATCTCAAAGACTGGTGAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.158

97.697

0.48